MmuINT0178725 @ mm10
Intron Retention
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40210441-40213189:+
Coord C1 exon
chr9:40210441-40210560
Coord A exon
chr9:40210561-40210895
Coord C2 exon
chr9:40210896-40213189
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTTCTTGCCCCTTCTATAGGAG
3' ss Score
9.17
Exon sequences
Seq C1 exon
CATTTCCAATTCCCAGACTAGATGATACCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGTGTCCATGAGTCTCAAGAGCCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
Seq A exon
GTGAGGAGTATCAGACAGGGCTGGCCACCACAATGGGCAGTTCCCTCTAGTCAGTGTGTCTCTTTCCTCCGGGGCCTTTCTCATTGGTTCTTTTTCATGATTTGATTTTTTTGTTATGGTCTTACTTTATTGACTTGCCCCACAGCCCACTCACTGGTTCTTCTAATATGCCATCTATCACTAATGCTTCCTTCCGAAAGGCAGACCCCTCCACCATTATCCTTTCCTTCACTCTTCCTTCCATTTCTTAGAAAACCCATTCAAAATCCTCTCATTGTATAACAGATAAAATTGTTCTTATAGCTTCTCTTTTTCTGTTCTTGCCCCTTCTATAG
Seq C2 exon
GAGACATGAGTGAAGCTGAGGAAGAAAGTGTTGAGCAACAAGATACACACAAGTCTACTTTGGCAAACACAGAAGTTCACCAGTCTCCAGATTGGGAAATAGTCATTGAGGATAATACCAGTAGACTTAATGAAAGATTTGGTACAAACGTTTCTAAAGTTAATAGTTTCACAAATATTAGGGAAACTATGCCTGTTCACTCCCAATCAGGGAGGCAGCATCATTGCCCTCTATGTGCAAAAAGCTTCACGTGTAATTCTCATCTTATTAGGCACTTAAGAACTCACACAGGAGAAAAACCCTATAAATGTATGGAGTGTGGGAAAAGTTACACACGGAGCTCACATCTAGCTAGGCACCAGAAAGTCCATAAGATGAACACTCCTCATAAACATCCTCCAAACCGGAAGACTGTGGATGGCCCTCTGGTCCAGTCTGAGGTAACTACCCGTGTGGAGAAACCATATACCTGTGATGATTGTGGAAAACATTTCCGTTGGACGTCGGACCTGGTCAGGCACCAGAGGACACATACAGGAGAAAAACCTTTTTTCTGTACTATCTGTAGCAAAAGCTTCAGCCAGAAATCTGTGTTAACGACACACCAAAGAATCCATGTTGGAGGCAAGCCCTACGTGTGTGCGAACTGTGGCGAGAACTTCAGTGAGCAGAAGCAGTATCTGACACACCGCAAGACACACGTGTCTGAGGAGCACCATCTGTGCAATGAGTGTGGCCGCTCCTTCAGCCATAGTGCAGCATTTGCCAAGCACCTGAAAGGCCATGCTTCAGTGAGGAACTGCCGCTGCGATGAGTGTGGTAAAACCTTTAGCAGGAGGGATCACCTTGTCAGACATCAACGAACACACACTGGGGAAAAGCCTTTTACCTGTGCCACCTGTGGGAAAAGCTTCAGCAGAGGCTATCACTTAATCCGGCATCAGAGAGTCCACACAGGAAAGACCAAGACCTAGCTAGGGGCCTTATGTGGAGAGCTTAATTCCGCCGCCAACTGAGACGGATGGGTTCTGTGTTCAACCTGAGAAGAACTCTTCTGAGGCATCTCTGACCTGCCCGTACCTTACATCACCTCTTCCAACTACCAAACAAAAGCCCCATCCAGAACGACTCAGCTTTTCTCAGTTGAGGCTTCTGTTTCACTGGCATGCTCCTGCCTCTACCTCATAGGTGTGGTGTAGGAGATGTGGGACTTAAGGAAATTTGGGTCACTGTATTTTGAGAAACATAGGCTGCTCTAGATCCTGGAGACTACTTGACAGCCTCAACTTCAGTGTGGTCAAGGATAAGTACGTAGGTCTGATAAGCGACCAACTTAAAACGGTCTGTCCTTACTGGACTCAAACCTTAAAGCACAAAACCCTAAACTCAAGATAGGAGGTTTGGGTCCTGATAGATTTGCCACACTGACGGGATAGCTACAGTTTCTCACTAACTCGCCTCTTCACTGTACACTTTCCTTTGATGCTGGAGACAAAGGGGAAGAATTTTGAAGGACAAATCCTTAAGGCTCCTTCACAAGGATTTTGACAGGCTGCTCCTTTCCCCATTGTCAGAATGACACTAAGTGCCACATACTGCTACAAAAGCGGGCCTAAGCAAAAGCCTCTTGGGGTGTACCACCCCTGTCTAAATACTCCTGTCTACTATTCAGCCACTGTCAGTTTGTCCCTTACATGCCTACTGCAAAAGAGGTGTAGTACTGGAGTGCTGAAGAACTCAGTAAAGCATAATTAAGACATGGTGAAATCCATTCCATTCCCACATAATGTTTAAGCCTGCCCTCCTTCATTTGGCTTGTGAGAAGGGATCTAAAGCTCTTGTTAGCATAGAAAGGCACTGTATCTAGTGCAGAATCATAATTGACTGAGAGAGACTAGAGGAGATATAAAACCAGTTCGGAAGACTATGAAACAGCTGTTGCCACTGGCTGAGACTATTCTGACACCCAGTCCTTGGTATCCCTGCCTGGGTTCTCTAATTTCTGGGAAGATTATGAACCCTAGTACTTGGGACCCTGAGAATTCATCAGAGTAAAGGGATTTTTATGTGTCTTGTGTTACTTGGTTTTTCATGTGTAAGTTCATTTTCATGTAATTGTGAACTAAAAAGTAGTATCTCCTGGTGGCCTACGGGTCTTTTACCTGTTCAATGTTCCCAGGAGGCTGAAATTTTATGACCTTACATGTCTGATCATCTATCTGAAAAGGACTGAGGACAGATATTCCATAAATGGGGCACAGGATGTGGGATTAAAGCATGAGAAGGAAGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602:ENSMUST00000026693:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF0009621=zf-C2H2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAGCCTGCAGAACCAG
R:
AGGGTTTTTCTCCTGTGTGAGT
Band lengths:
348-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types