MmuINT0178725 @ mm9
Intron Retention
Gene
ENSMUSG00000025602 | Zfp202
Description
zinc finger protein 202 [Source:MGI Symbol;Acc:MGI:1933401]
Coordinates
chr9:40018026-40021189:+
Coord C1 exon
chr9:40018026-40018145
Coord A exon
chr9:40018146-40018480
Coord C2 exon
chr9:40018481-40021189
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTTCTTGCCCCTTCTATAGGAG
3' ss Score
9.17
Exon sequences
Seq C1 exon
CATTTCCAATTCCCAGACTAGATGATACCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGTGTCCATGAGTCTCAAGAGCCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
Seq A exon
GTGAGGAGTATCAGACAGGGCTGGCCACCACAATGGGCAGTTCCCTCTAGTCAGTGTGTCTCTTTCCTCCGGGGCCTTTCTCATTGGTTCTTTTTCATGATTTGATTTTTTTGTTATGGTCTTACTTTATTGACTTGCCCCACAGCCCACTCACTGGTTCTTCTAATATGCCATCTATCACTAATGCTTCCTTCCGAAAGGCAGACCCCTCCACCATTATCCTTTCCTTCACTCTTCCTTCCATTTCTTAGAAAACCCATTCAAAATCCTCTCATTGTATAACAGATAAAATTGTTCTTATAGCTTCTCTTTTTCTGTTCTTGCCCCTTCTATAG
Seq C2 exon
GAGACATGAGTGAAGCTGAGGAAGAAAGTGTTGAGCAACAAGATACACACAAGTCTACTTTGGCAAACACAGAAGTTCACCAGTCTCCAGATTGGGAAATAGTCATTGAGGATAATACCAGTAGACTTAATGAAAGATTTGGTACAAACGTTTCTAAAGTTAATAGTTTCACAAATATTAGGGAAACTATGCCTGTTCACTCCCAATCAGGGAGGCAGCATCATTGCCCTCTATGTGCAAAAAGCTTCACGTGTAATTCTCATCTTATTAGGCACTTAAGAACTCACACAGGAGAAAAACCCTATAAATGTATGGAGTGTGGGAAAAGTTACACACGGAGCTCACATCTAGCTAGGCACCAGAAAGTCCATAAGATGAACACTCCTCATAAACATCCTCCAAACCGGAAGACTGTGGATGGCCCTCTGGTCCAGTCTGAGGTAACTACCCGTGTGGAGAAACCATATACCTGTGATGATTGTGGAAAACATTTCCGTTGGACGTCGGACCTGGTCAGGCACCAGAGGACACATACAGGAGAAAAACCTTTTTTCTGTACTATCTGTAGCAAAAGCTTCAGCCAGAAATCTGTGTTAACGACACACCAAAGAATCCATGTTGGAGGCAAGCCCTACGTGTGTGCGAACTGTGGCGAGAACTTCAGTGAGCAGAAGCAGTATCTGACACACCGCAAGACACACGTGTCTGAGGAGCACCATCTGTGCAATGAGTGTGGCCGCTCCTTCAGCCATAGTGCAGCATTTGCCAAGCACCTGAAAGGCCATGCTTCAGTGAGGAACTGCCGCTGCGATGAGTGTGGTAAAACCTTTAGCAGGAGGGATCACCTTGTCAGACATCAACGAACACACACTGGGGAAAAGCCTTTTACCTGTGCCACCTGTGGGAAAAGCTTCAGCAGAGGCTATCACTTAATCCGGCATCAGAGAGTCCACACAGGAAAGACCAAGACCTAGCTAGGGGCCTTATGTGGAGAGCTTAATTCCGCCGCCAACTGAGACGGATGGGTTCTGTGTTCAACCTGAGAAGAACTCTTCTGAGGCATCTCTGACCTGCCCGTACCTTACATCACCTCTTCCAACTACCAAACAAAAGCCCCATCCAGAACGACTCAGCTTTTCTCAGTTGAGGCTTCTGTTTCACTGGCATGCTCCTGCCTCTACCTCATAGGTGTGGTGTAGGAGATGTGGGACTTAAGGAAATTTGGGTCACTGTATTTTGAGAAACATAGGCTGCTCTAGATCCTGGAGACTACTTGACAGCCTCAACTTCAGTGTGGTCAAGGATAAGTACGTAGGTCTGATAAGCGACCAACTTAAAACGGTCTGTCCTTACTGGACTCAAACCTTAAAGCACAAAACCCTAAACTCAAGATAGGAGGTTTGGGTCCTGATAGATTTGCCACACTGACGGGATAGCTACAGTTTCTCACTAACTCGCCTCTTCACTGTACACTTTCCTTTGATGCTGGAGACAAAGGGGAAGAATTTTGAAGGACAAATCCTTAAGGCTCCTTCACAAGGATTTTGACAGGCTGCTCCTTTCCCCATTGTCAGAATGACACTAAGTGCCACATACTGCTACAAAAGCGGGCCTAAGCAAAAGCCTCTTGGGGTGTACCACCCCTGTCTAAATACTCCTGTCTACTATTCAGCCACTGTCAGTTTGTCCCTTACATGCCTACTGCAAAAGAGGTGTAGTACTGGAGTGCTGAAGAACTCAGTAAAGCATAATTAAGACATGGTGAAATCCATTCCATTCCCACATAATGTTTAAGCCTGCCCTCCTTCATTTGGCTTGTGAGAAGGGATCTAAAGCTCTTGTTAGCATAGAAAGGCACTGTATCTAGTGCAGAATCATAATTGACTGAGAGAGACTAGAGGAGATATAAAACCAGTTCGGAAGACTATGAAACAGCTGTTGCCACTGGCTGAGACTATTCTGACACCCAGTCCTTGGTATCCCTGCCTGGGTTCTCTAATTTCTGGGAAGATTATGAACCCTAGTACTTGGGACCCTGAGAATTCATCAGAGTAAAGGGATTTTTATGTGTCTTGTGTTACTTGGTTTTTCATGTGTAAGTTCATTTTCATGTAATTGTGAACTAAAAAGTAGTATCTCCTGGTGGCCTACGGGTCTTTTACCTGTTCAATGTTCCCAGGAGGCTGAAATTTTATGACCTTACATGTCTGATCATCTATCTGAAAAGGACTGAGGACAGATATTCCATAAATGGGGCACAGGATGTGGGATTAAAGCATGAGAAGGAAGATATACATCTATGCCTGGTTTCTTCTGCTTATTTTACAATCACAAAGGGATATGGTGGGTTAGCAGGCATCTTCTCAGCTCTAATCCAATAGGGAAATTCTCTTAACGATGGACTAGTCAAATTTTAATGCCAGTCAATCATTGTCGTGAAGATACATAAGAAATAAATAAAGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCTGGAGGTCCTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTATGTTTGAAGACAGCTACAGTGTACTTACATATAATAAAATAAAACAATAAATCTTGGGGCCGGAGTGAGAAGACAAAAAAAAATTATTTAAAAGAAAGAAATAAAGTGATATTTGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025602-Zfp202:NM_030713:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=8.0),PF0172213=BolA=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=8.0),PF0009621=zf-C2H2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAGCCTGCAGAACCAG
R:
AGGGTTTTTCTCCTGTGTGAGT
Band lengths:
348-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: