HsaINT0186421 @ hg19
Intron Retention
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:12994]
Coordinates
chr11:123594997-123598303:-
Coord C1 exon
chr11:123598184-123598303
Coord A exon
chr11:123597700-123598183
Coord C2 exon
chr11:123594997-123597699
Length
484 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTCTCACCCTTTCTACAGGAG
3' ss Score
10.89
Exon sequences
Seq C1 exon
CATTTCCAATCCCCAGACCTGATGAGATCTCCCAGGTTAGAGAGGAAGAGCCTTGGGTCCCAGATATCCAAGAGCCTCAGGAGACTCAAGAGCCAGAAATCCTGAGTTTTACCTACACAG
Seq A exon
GTGAGGAATGACAAAAACGGTGTTACCCACCCTGAGCCAGCAGTTCCTCTAGGCAGTGCTTCTCTCTCTCTGTAGGGCCCCGCTCTCATCAGTTCTTCTAACATGTCAGCCAGTACTGCTTTCTCCCTCTGACAGCCATTTCTTCTGTCATTGCCCTCCTCTTTTCTCCTCCCATCATTTGTCTGATAGCAATGTAATACAAAAGGGTGAAAGAAAAATGTTAACTTTTGGAATTGCAGCTATACCATTTACTGTACAATTCCCTTAAACCCTCGATTCTCAATCTCTGCATTTGTAAAATGAAGATTATATTTGTGCATACCAAGGTTTGTTGATAGCATAACAATATGAGAAAGTGCTTGGCACAGGACAGGCATTCTATTTAGTCTTGCCATCTCAAAACCCTTTGTAAAAATCTCCCCATTGTGTAGAAGGCATTGTTGCCGCTACAGTGACCCCCTTTTTCCTCTCACCCTTTCTACAG
Seq C2 exon
GAGATAGGAGTAAAGATGAGGAAGAGTGTCTGGAGCAGGAAGATCTGAGTTTGGAGGATATACACAGGCCTGTTTTGGGAGAACCAGAAATTCACCAGACTCCAGATTGGGAAATAGTCTTTGAGGACAATCCAGGTAGACTTAATGAAAGAAGATTTGGTACTAATATTTCTCAAGTGAATAGTTTTGTGAACCTTCGGGAAACTACACCCGTCCACCCCCTGTTAGGGAGGCATCATGACTGTTCTGTGTGTGGAAAGAGCTTCACTTGTAACTCCCACCTTGTTAGACACCTGAGGACTCACACAGGAGAGAAACCCTATAAATGTATGGAATGTGGAAAAAGTTACACACGAAGCTCACATCTTGCCAGGCACCAAAAGGTTCACAAGATGAACGCGCCTTACAAATATCCCCTAAACCGGAAGAATTTGGAAGAGACCTCCCCTGTGACACAGGCTGAGAGAACTCCATCAGTGGAGAAACCCTATAGATGTGATGATTGCGGAAAGCACTTCCGCTGGACTTCAGACCTTGTCAGACATCAGAGGACACATACTGGAGAAAAACCCTTCTTTTGTACTATTTGTGGCAAAAGCTTCAGCCAGAAATCTGTGTTAACAACACACCAAAGAATCCACCTGGGAGGCAAACCCTACTTGTGTGGAGAGTGTGGTGAGGACTTCAGTGAACACAGGCGGTACCTGGCGCACCGGAAGACGCACGCTGCTGAGGAACTCTACCTCTGCAGCGAGTGCGGGCGCTGCTTCACCCACAGCGCAGCGTTCGCCAAGCACTTGAGAGGACACGCCTCAGTGAGGCCCTGCCGATGCAACGAATGTGGGAAGAGCTTCAGTCGCAGGGACCACCTCGTCAGGCATCAGAGAACACACACTGGGGAGAAACCATTCACGTGCCCTACCTGTGGAAAAAGCTTCAGCAGAGGATATCACTTAATTAGGCATCAGAGGACCCACTCAGAAAAGACCTCCTAGCTAGGTCCCCATGTGAGGAGATCTGCTTTCAGCCCTCACCTAAGGGAGGTGAGGAAGAGGAAAAGCCCTCTTGTCAGCCTGGGAAGACCTTTTCGAGGGAGTCTCCCTGACCTGCTCAGATCTGACATTACCTCTTCCTGCAACTAAACACGAGCCTGGGCAGAACCTCTCAGCCTTCCTCTACGCCTTGAGGGGATGTTTCATCCAAAGTACAACCTGAATTGAGGCTTCTCCTTCACTGGAGTGCACCTGCCTCTACCTCATGGGTATAAAGTAGGAGAACTAAGAGACTTAAGAGGTCGTGGTTCCTATATCGTCCAAAAAATAGGCTGTTACATATCCTAAAGACTGCTCAACAGCTTCAAGTTGAAAGTGGCCAAGGACAGCCCCTTAGGTTTGGGAAGGGACGAGCCTGAAGGATTCTGTCTTTACTGGGGTCAAATCTTAAAGCACACAGCTCTGGACTCAAGACAGGAGGTTTGCGTCCTGATGGCTTTGCCACACATTCACAGGATAACTGCATAGATCCCTCGCTGTCTGATTCACTTCTTACCATGCACTTTCCTTTGATGCTGAGGAGAAATGGAAGTGGGCGAAAAATCTCAAGGCTGCTTCATGTGGACCTTGTCAAGCTGCTCCCTCCCCCAGCGTCAAATTGTTATCAGGTGCCAAACACTGCTAGAAAGGAGGGCCTAGTCAGAAGCCTCTTTCCATACGAGTTTTGGTTTTGTTTTTAATATTTTTTTCTATTAAAATACTCATGCATTTAACCTTCCCGTTATTCAACCAGTCTCTTGGTTGCATCCCTAGCACTTCTACTACAAGTGAGATGGTAGTGTTTGAGTGCTTATTGAGTAAAGCATAATTCGGTCATAATGAAATCGTTCACATTCCCTCATATGCACAAGCCCACCAACCCCTTCACACCCCCCTTCACAGGGGTCGTATGAGTAAGGGGATTTGGAAACTGTCAACTTACAAAGGCACTATAACAATTACAGAATCATGATTGCCATGGGCCACTTTATTTACATGAAGACAACTGGAGAACGACTAAGACCAAATTATGGAAAATAAGAAAAAGCTGTTGCTGGCAAGACCATCAAGACTGTTCTGACACCCTGTCCCCATCATCCCTGACTGAGTACTCTGACATCACGGAAAGTGTTGAACCTGGGACCCTGAGGAATTCACCAGGAGTAAATGGCTTTCATGTATTTGTGTTGTTTGCTTTTTCTTACGTGATTTTATGTTCATAGAGCTAGAAAGTAGCATCTCATGATGGCCCAACAATCTCTGTTGCCAGTTAAAGGTTCCTTGGAGATGAGGCTGAATAATTATGAACCTCACCTTCTCTGATTGTGGGAGTGGCAAGAACTGGGGAGACGTCCTCCATAAGTGGAGCACAGGGTATGGGGTTAAAGCATGACAGGGAGAGTCTTCTGTGCCTGGTTTCTTCTCCTCTATCTCATAATGCATTATGGGCCCGAGGAATAGGGGAGGGTTAATAAGACTCCAACCCTAATGGCCCAACAGGGAAATTCTCATTTTGGTCGATGATATTCTGATGGACTGGTTTGGTCTTAATACCAGTCAACCGTTGTCCTTCTGGAAATATACATATATGAAATAAATAAAGGTAACACTTGCAGCCAAGTTCCCTGGTTTCTGGGACTTCCCATCTTACCCATTCCTTTTCCAGGGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-ZNF202:NM_003455:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=NA C2=0.230
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0009621=zf-C2H2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGAGACTCAAGAGCCA
R:
TCCTGTGTGAGTCCTCAGGTG
Band lengths:
357-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)