RnoINT0167846 @ rn6
Intron Retention
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44065072-44068003:+
Coord C1 exon
chr8:44065072-44065191
Coord A exon
chr8:44065192-44065527
Coord C2 exon
chr8:44065528-44068003
Length
336 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTTCTTACCCCTTCTATAGGAG
3' ss Score
9.54
Exon sequences
Seq C1 exon
CATTTCCAATTCCCAGACTAGATGATCCCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGAGTCCATGAATCTCAAGAACCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
Seq A exon
GTGAGGAGTATCAGTCAAGTCTGGCCACCACAATTGGGCAGTTCCCTCTAGTCAGTGCATCTCTTTCCTCCTGGACCTCTCTCATTGGTTCTTTTTCTTTATTTGATCTTTTTGATGTGGCCTCGCTTTATAGACTTGCCCCATAGCCCACTCACTGGTTCTTCTACTATGCCATCCATCACTAACGTTCTCTTCTGAAAGCCAGACCCTCCCACTGTTACCCTCCTCTTTACTCTTCCTACTGTTTCTTAGAAAACCCATTCAAAATCCTCTCATTATCTGAAAGATATTACTGTTATTATAACTTCTCCTTTTCTGTTCTTACCCCTTCTATAG
Seq C2 exon
GAGACATGAGTGAAGCCGAGGAAGAATGTGTTGAGCAACAAGATACAAACAAGTCTATTTTGGCAAACACAGAAATTCACCAGACTCCAGATTGGGAAATAGTCATTGAGGATAATACCAGTAGACTTAATGAAAGATTTGGTACAAATGTTTCTAAAGTCAATAGCTTCACAAATATTAGGAAAACTATGCCTGTCCACTCCCAGTCAGGGAGACAGCATCATTGCCCTCTATGTGCAAAAAGCTTCACATGTAATTCTCATCTTATTAGGCACTTAAGAACTCACACAGGAGAAAAACCCTATAAATGTATGGAGTGTGGGAAAAGTTACACACGGAGTTCACATCTAGCGAGGCACCAGAAAGTCCATAAGGTGAACACTCCTCATAAACATCCTCCAAACCGGAAGACTGTGGATGCCTCTCAAGTCCAGTCTGAGGCAACTACCCGTGTGGAGAAACCATATACCTGTGATGATTGTGGAAAGCACTTCCGTTGGACATCGGACCTGGTCAGGCACCAGAGGACACATACAGGAGAAAAACCTTTTTTCTGCACTATTTGTGGCAAAAGCTTCAGCCAGAAATCTGTGTTAACAACACACCAAAGAATCCATGTTGGAGGCAAGCCCTACACATGTGCGAACTGTGGAGAAAACTTCAGTGAGCAGAAACAGTATCTGGCACACCGGAAGACACATGTGTCTGAGGAGAACCATCTCTGCAGTGAGTGTGGGCGCTCCTTCAACCATAGTGCTGCGTTTGCCAAGCACCTGAAAGGCCACGCTTCAGTGAGGAACTGCCGGTGTGATGAATGTGGTAAAAGCTTTAGCAGGAGGGATCACCTTGTCAGACATCAACGAACACACACTGGGGAAAAGCCTTTTACCTGTGCTACCTGTGGAAAAAGTTTCAGCAGAGGATATCACTTAATCCGCCATCAGAGAATCCACACAGGAAAGACCAAGACCTAGCTAGGGGCCATATGTGGAGAGCTTAATTCAGCAGCAAACTGAGATGGGATGGGTTCTGTGCTCAACCTGAGAAGAACTTTTGTAAGGCGTCTCTTTGATCTGCCCATACCTTATGTCACCTCTTCTAACTACCAAACAAAAGCCCCATCCAGAACTACTCAACTTTTCTCAGTTGAGGCTTCTGTTTCACTGGCATGCTCCTGCCTCTGCCTCATGGGTGTGATCTAGGAGATATGGGACTTAAGGAAATTTGGGTCATTATATTTTGAGAAACGTAGGCTGCTCTAGATCCTGGAGACTACTTAACAGCCTCAACTTCAGTGTGGTCAAGGATAAGGACCTAGGTCTGATAAACAACCAACCTTAAAGGGTCTGTCCTTACTGGGCTCAAACCTTAAGGCACGCAGCCCTAAACTCAAGATAGGAGGTTTGGGTGCTGATAGATTTGCCACACACTGACGGGATAGCTACAGATTCCTCACTAACTCGCCTCTTCACTGTACACTTTCCTTCAATGCTGGAGACAAAGGGGAAGAGTTTTGAAGGACAAATCCTTAAGGCTCCTCCACAAGGATTTTGACAGGCTGCTCCTTTCCCCATTGTCAGAATGACACTAAGTGCCACACACTGCTACAAAAGCGGGCCTAATCAAAAGCCTCTTGGGGTGCACCACACCTGTCTACATACTCCTGTCTTTAGCTTTTCTACTATTCAGCCACTGTCAGTTTGTCCCTTACATGCCTACTGCAAAAGAGATGTAGTCCTGGAGTGCTGAAGAATTCAGTAAAGCATAATTAAGACATGGTGAAATCCATTACATTCCCACATAATGTTTAAGCGTGTCCTTTATTTGGCTTGTAAGAAGGGATCTGAAGCTCTTGTTAGCGTAGAAAGGCACTGTATCCAGTGCAGAATCCTAATTGACTGAGGAAAACTAGAGAAGATATAAAACACTTTGGAAGACTATGAAACAGTTGTTGCCACTGGCCAAGACTGTTAGGACTGTTCTGACACCTAGTCCTTGGTATGCCTGCCTCGGTTTTTTAATGTCTGGGAAGATTATGAACCCTAGTACTTGGGACCCTGAGAATTAATCGGAAGTAAAGGGATTTTTATGCGTCTGTGTTACTTGGTTTTTAATGTGTAAGTGTTTTCATGTAATTGTGAACTGAAAAGTAGTATCTCCTGGTGGCCTATGGGTCTTTTGCCTGTTCAAAGTTCCCAGGAGGCTGAAATTTTATGAACCTTACATGTCTGGTCATCTGAAAAGGACTGAGGACAGATACTTGATAGACAGAGCCCAGGATGTGGGATTAAAGAATGGGAAGGCAGATACACTTCTATGCCTGATTTCTTCTGCTTATTTCACAATCACAGAGGAATATGGTGAGTTAGCAAGTCATCTTCCCAGCTCTAATATCCCAATAGGGAATCCTCTCATGATGAAGCCAGTCAATCGTTGTCATGAAGATACATAAATAAATAAAGTGATACTTACAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932:ENSRNOT00000084416:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF0009621=zf-C2H2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCAGGAGTCCATGAAT
R:
CCTGTGTGAGTTCTTAAGTGCCT
Band lengths:
358-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]