BtaINT0165359 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034005 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]
Coordinates
chr22:16497843-16502686:+
Coord C1 exon
chr22:16497843-16497987
Coord A exon
chr22:16497988-16501214
Coord C2 exon
chr22:16501215-16502686
Length
3227 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TTTTTGTTTGTTTGTTTCAGGTG
3' ss Score
12.68
Exon sequences
Seq C1 exon
GGTCAGAACATGTTCTGGGACATGGCTGTAGTCCTGAAACCAACACAAGAGGCACCTGCTGCTTCAACCCCAGGCAGCTCTTCATTACCAGGGACTCTGGCCAAGAGCGAGCTACTGGACACTCATGGGAACATGGCCTGTCTAG
Seq A exon
GTGAGGTCAATTCTCTGATTCAGAATCTGACTGTTGAGGTTTCTCAAAATCTTTTCAGAGGCTGCTGGTGTGGTCTCCTAGCCTGAGCAACAGAGAGTACTGAGGTGTTGAAGGTGTCAGGGAGAGCTGGGCAGAGGAATACTGAAAGATGCCTATGCATTTGTCATAGGAAATGGCTTGTTTTGCACACAGTTTCAAGACACCACACCAGGCAAACACAGGTAAACTCCAAATTTAGTTTTTTAAAAAATAATTTTACATATTTATTTATTTTTGGCTCTGCTGGGCCTTCTTCCTGCAAAGGCAGTGGCTTCTCTGTTGCAGATCACAGACTCTAGGGAGCATAGGCTTTGAGAGCTGTATAGTTGTGGCGCACAGGTTTAGTTGGTCCTCGGCAAATGGGATCTTCCCGGATCAGGGGATCAAACGTGTCACCTACTTGGCAGGCAGATTCTTTACCACTGAGCCACCAGGGAAGTTCTCCAAATTTAACTTTTGATTACATTTATTGTTCAGCAAGTTTCATATCTATGCACACATGTAGACACATGTCCTCTCCCTATGCTTCGTGTTTGTTGTAGCTTGGTGAGCCTGCAAGAGAAGCTAACTAAGATAAGAAGGGTCACCTTTTGTGGTGATTTTTTGAGGTGTTCCATTTTCATAGGTCTTTGTGGACTTTCTAGAGGATTTTGAACACTTGTGTCAGCCATGATGATGTCCAAAGTCAGTCATGATGGCTGACTTACCACCTGGTTCTCCAGGCTGGGACTCAGGATATGCCTGGCTAGCAGTGGTGGAAGCTTGTGAAGTAGGGACATGTAACTGGGTCAAGTGTGTGGTCACCATAAGTCCTGTGTTGTGGAAGCAGTCCCTGCATGCCTGCCAAGGCCCCTCTGGCACTGGCATGCTATGAGTCTGCCTGGCCAGGGCTGTGGCTGAATATTCTGAACCCTCTCTCCTCCCTAGCCAGTTCCTCAAGCATTTGCAAACCAAGTCCCTTTCTTAAACCAGTGTTTTGGGGAAGGTTAGGACGGCCACCTTTCATATTCCTGTGTCTTCTTTAATTCCCCAAACTCTCAGTAACTTCTGTTTCCTATCTTTGCTTTCTGTTCTAGTCCTTCTGGCACATTCCCCTTATATCACTGCTTTTCTGTTTCCCTGCTTTATCAGACATTCGTGGTCTGAACTCCAACAGCTGCACCCATCCACTAGGAATGGCCACTGTTTTCTATTTTTCTTTTTTTTGGCTGTGCGGGTCTTTGTTGTAGCAAGTGGGCTGTAGGCTTTCACTAGTTGTGGTGCACCAGCTTCTCATTGTGGTGCAAGGGCTTTTCTTGTTGCAGAGTATGGGCTCAGTGGTTGCCTCAAGGGCTTCTCTACTTGTAGCATTCAGGCTCTCTAGTTGTAGTGTGCAGTCTTAATTGCCCTGTGGCATGTGGGATCTTAGTTTCACAACCAGGGATTGAACTTCTGTCCTTTGCATTGGAAGACTGAGTCTTAACCACTGGACCACCAGGCAAGACCAGACAACTATTTTCTTTCCCTGCTTTTCCCAGCCAGGACTCACCTTTCTGCCAGCCATTTCTGTTGTTACAGGTAATGGCGAGAACACTGACTTCTAGCCATTGAGGGGGGAACCCCAGTGTAGTTGCTGCCATATCTCTGAGAACTCTTTGACCTTGAGCAAGTCCATTCTTTTTCTGAACCTCCATTTTCTGTTCTATGAACTGGGGTCTGTTCATTCAGTAAATATAAGATTTGTTGAGGTACTGCTTCCTGTGTGCCCAGCTGTGTAACAGGTGCTGGACATATAGCAGTGAGTGAAAACAGCCTTGCACTTTTTTAGCTCCCATACAAGTGAAGGGAAATACTTTCATCTTGATAATAAAATTGTATAGTATACATGAAAGTACTTTGGAAATTTTGATGTGAATGTCTGAGAGTTTTATTTACAGTTTGGTGTGTACTCATTAAAATTGAATTTATTAAGGTTTATACATTAAAATTAAAAATTTTTTTTTTTTAATTTTTTAGCCATACCACGCAGCATGTGGGATCTTAGTTCCCTGCCTAGGGATCAAACCCTTGCACCCTGCATTGGAAGTACAGAGTGTTAACCCCTGGACTGCCAGGGAAGTACTTAAAGTGTATATATTTAAAACAAGTTTTTAAACTTTTTAGTATAACTTGTTTTTATTTCCTTTGTACATCTGGAAAAATTCAGAAGATGGGGCTTCCATGGTGGCTCACTGGTAAAGAATCCACCTGCCAATGCAGGAGACACAGGTTCGATCTCTGATCCAGAAAGATAACTATTGAGCCTGTGCTCTAGATCCCGGGAGCTGCAGCTACTGAGTCTGTGCACCCTAGAGCCCATGCTCCGAAATAAGACAAGCCATGGCAATGAGAAACCTGAGCATCACAACTGGAGAGTAGCCCCCGCTCGCCACAACTAGAGAAAAGCCCAAACAGGAGCGAAGACCCAGCACAGCCAAAAATAAATAAAAATATTAAAAAAAAAAAAAAAAAGAAAAGAAAAAGGAGAGGGGGATTCCCTGGTGGTCCAGTGGTTAGAACTCCCCGCTTCCACTGCTGAAGGCCCAGGTTCGATCACTGGTCAAGGAACTAAGATCCCAAAAGCCATGTGATGTGGCCAAAAAACCAGGAAAGGAAGAGTGAAGAGGTAGTAGGGGAAAGAGATAATAAGGAGAAAGTAAGATAAGAAGGAAGAAAAGAAGATATAAGAGCAGTTTTAAACTACAGGGAGAAAAATGGAGTAGAGTTTAAAAAAAAAAATCACAACAGTAGAAATAGATATAACCAAAAAAAGATTAGCTTTTCAGGGTTTTCTGTTGTCGAAGTCAGGGCTTTGTTGTATCCAGGGCTCAGCCATTCTCTTTCTCTGACACTGCCCTTCCTGAGTGACTGTGCTGGAGTTGCATTACCATGGTCTTAGCCAGCAACCAAACTGGACTGTCCCCTTGCCCAGTATTGCTCTGTGCCTTAAACATCCCCATGCCACCCACTCCCTTCTTGGTTGGAGAGTTGCCCTGGTCTGTGCCAGTAGGGTGTCTGGATGCTCGATTCCCCTGTGCAGTTGCTCATGACCTGCAGCTTACAGCTGAATTCAATATACTTCCCCATCTTTATGAATTGACCATCCTATTCTTTTTCTAGATCTTAAAAATCTGAAACTTACATTTTCTGTTTTTGTTTGTTTGTTTCAG
Seq C2 exon
GTGCTGAAACCAAAAATCGACAGTTATTGGTTCCAAAAATTGAAATATGTGATGAAACAGAAAAATCCTTCATCGTTTCAGGAAGAATCCAGAAAGTTGACCCGCAAGGACCCAAGTTAGGAGAAGCCTGTGAAAATAGGAACATGTTAAAGAGGCAAAGAATAAAGAGGGAGCAGAAAGATTTTGGACAGGTGACAGTGAAGGACTGTCACCTCCCTGAAAACCTCAAAGAAGAGGAAGACCAGAAGTGTCCCAAAGCTGAGGAGCGATACACCCTCAGTTCTGGCTCTGTTAAAAATCAGAAAAGCCAGCCTGGGCAGAAACCTTTTACATGCGGCGTGTGTGGGAAAGGCTTTAGCCAGAGCGCAAATCTCGTGGTGCATCAGCGAATCCACACTGGGGAGAAACCCTTTGAATGTCACCAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTTGTTGTGCATCAGCGAATCCATACTGGACAGAAACCCTATGTTTGTTCAAAGTGTGGGAAAGCCTTCACCCAGAGTTCAAACCTGACTGTACATCAAAAAATCCACTCCTTAGAGAAAACCTTTAAGTGCAACGAATGTGAGAAAGCCTTCAGTTACAGCTCACAGCTTGGCCGGCACCAGAAAGTCCACATCACAGAAAAATGCTATGAATGTAACGAGTGTGGGAAAACGTTTACCCGGAGCTCCAACCTCATTGTTCACCAGAGAATCCATACCGGGGAGAAGCCATTCGCCTGTAATGACTGTGGCAAAGCCTTCACCCAGAGCGCCAATCTTATTGTGCATCAGCGAAGCCATACTGGGGAGAAGCCATATGAGTGCAAAGAGTGTGGAAAAGCCTTCAGTTGTTTTTCACACCTCATCGTGCACCAGAGAATTCACACTGCAGAGAAACCTTATGACTGCAGCGAGTGTGGGAAGGCCTTCAGTCAGCTCTCTTGCCTTATCGTGCACCAGAGAATTCATAGCGGGGACCTTCCGTACGTGTGCAACGAATGTGGGAAGGCCTTCACGTGCAGCTCGTACCTGCTTATTCATCAGAGGATCCATAACGGGGAGAAGCCATACACATGCAATGAGTGTGGCAAGTCCTTCCGGCAGAGGTCGAGCCTCACGGTGCACCAGAGAACCCACACGGGGGAGAAGCCCTATGAGTGTGCCAAGTGCGGTGCAGCCTTCATCTCCAACTCGCACCTCATGCGCCACCACAGAACCCACCTCGTGGAGAGCACATAGAGGGCAAGGGAGACCTCCAGGTGCCGATCCAAACCTCCCGCTCCCCAAGTCGGATAGAAACCTCTTGGCTGTTTCCTCCTCGGCAAAAATGAAGCCTGCTCTGTCCTACAAAGTTACGGTTTTGGACTTGCCTGGTGGTCCAGTGGGTAAGACTCAGCTTCCAGTGCAGGGAGCACGGGTCTGATCCCTGGTCGGGGAAGTTCCATATGCTCTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034005:ENSBTAT00000011532:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF127602=Zn_Tnp_IS1595=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]