RnoINT0167714 @ rn6
Intron Retention
Gene
ENSRNOG00000032919 | Zfp105
Description
zinc finger protein 105 [Source:RGD Symbol;Acc:1309905]
Coordinates
chr8:132004677-132009981:+
Coord C1 exon
chr8:132004677-132004821
Coord A exon
chr8:132004822-132008557
Coord C2 exon
chr8:132008558-132009981
Length
3736 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
TTATCTGTTTCTTGGTACAGGTA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGTCAGAAAATGTTCTGGGACATGGCAGTGGTACTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCCTTGGGAGCTACTCATTGACAGGGACTCTGGTCAAGAGTGAAATCCTGGAGCCTCATGGGAACCCAACCCCACTAG
Seq A exon
GTAAAGTTCAGCACCGTGATCTCAGTCACATTAAAACGTGGGCAGGAGTCTGGTTTCTCTTTTTGAACCATATAGTGTGAAGGTGTTGACCCTGTCAACCCTTCAGAGCTGCTCATCCAGTGGCCATAGTAAGAGGCTTACTTTATACAGTCTAAAGACCACACGGGTAAGTTCCAAACTCACTTATTCATCATGCTTACTTTTCAGCACTTTCCATGTCCACACACATGTAAGCCCATGTCTTCATGTGTTTTATGGTTATTCATAAGTTGCAAGCAAAGGACAGTGCTCTGCATGTGTTTTCATTTTCTTTTCTGAGATGGTCCGAAGGCCCAGACTAGCCTGAAGTTCACTAAATAGGCAAGACTGACCTTGACTGTTGGTCTCCTGTCTTTACTTCCCCAGTGTCACTATGTGTGTTGGGGATTAAACCCAATGCTTCATACATGCTAGGCAAGCAGTTTACCAATCAAGTGACAACCTCAGTCTTAAATGTCTTAAATATCTTGAGAAATGGCTCAGTGGGTAAGAGCACTCAGTGCTCTCCCAGAGGACCTAGTTTAATCGCAAGCACCCACATGGCAGTTCACACCTGTCTATAAGTCTGGTTCCAGTGACTCTGCCCTCAGACATACATGTAGGTAAAATACCAATGCATATAAAATAAAAAGAAAGAAGTAATTTTTTAAAGCTAGTAACTTTAGGGCTATTGAGACAGCTGAACAGGTAAAGACTCCTGATGACCAAGTTGGATCCTAAGACCCACATGGATAGTGGAAGAAAGCAGTACATTGACTCCCAGAAGTCAACCTCTGACGGCCACACGTGTGCTTTGACAGGCACCTTCAGCTTGGTATCATGGCCTTTAATCCCAGCACTCTGAGATCGTGGCAGTTGGATCTCTCTGCATTTGAAGCCAGCCTGGTCAACATAGCTGGTCCAGACCAACTACATAGTAAGGGCTACATAGTAAGACTCTGTCTCAAAACAAACAAAACATACCTTCAACATGGAAGAAGTTATAAACCATTAGTATGAAAATGATTTAAGAAGTTAATTCAGGCATTGAGTATGATGGCTTATTCCTTTAATCCTAGCACTTAGGAGGTAGATGCAGGTTAGGTCCCTGACTTCTAGGCTACCCTGGCCTTTAGAGTGAACAAGGGCTACACAGAGAAGCCCTGTCTTAAAGCAGTAGCTCAGGGCTATCAGATGTCTCAATGATGAAGGCAGTTGTTGCCACGGTTTTTGACCCGAGTTCAATCCCATGGAACCACGTGGGAGAAAGGATCAGCTCCTGCAAGTTGTCCTCAGACTTCCACATGCACACTGCACACTGTGCATGTGCACAGACACAAGACACAAATGTTGGGTGGGGTGAGCAGTTTATTCAAATGTACAGAGATTAAAAGGTACCCAAGAAGCAGGTGGAAATGTTCATCTTTATAAGAGACAACACAGACTAAAAACAGTAAGATGTTCTCACTTAATTAAATCTTTATTAATATTGTTGTTGTTATCATCTTGGTTTGTGGTTTTGTTTTTGAGACAGGGTCTCTCTACATCTCTGCATAGTCCTGGCTGTCCTGAAACTCATCATGTAGACCAGGCTAGCCTTGAACTCACAGATATCAACCTGCCAAATGTCCTCTAGTTACTGGAATTAAAAGTTTATACCACAACACTGGCCCATGAAATCAGTCTTGATTGGTTGTAGCAGAATATTGCCTGTGACTAAGGGTTGAAAATGTCAGAGTTGTCTCAAGGGAGAAAAATTATGCTTCATAACTAGAGTATACAAAGTTGCTTAGAGGGCCAACAATGTAAATTTCAAATCTTTTCTGTTCTGTTTTGGTTTTTTGTTCGTTTTCCCTGACAGTGTTTCATGTAATCTAGACGACCTTGAATCTTTGAAGGTCTTGCCTCTGCTTCCCAGATGTCGAGATCACAATTAGGCTTTATTTATCTGTTTACTTTGTGTATGTATTTATGTACCCATGCCACAATGCACTCACAGAGGTTGTGGGGTTAGCTTTGCCCTTCCATTTTTTCCCCCTAAGATTTATTTAACTTATGTGTATGAGTACACCGTGACTCTCCCCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTTAAATGGCCCAGGGTTGGGTAGCAAGAACTTGTACCAGCTAAAGATTATACAGATTACATGTTCTTTGAAATAGTGAAAGGCGTGAGTTTATAGTTCAAAATGCAGTGCATATATTTAACGTATTGCTGCCTTTTGCTCAGTCCTCTGCACCAGGGGGAAGGAGTAAAAGGAAGAAAGTCAGATACTGATGAGAACTCACTGATGCTCTGGCCATGGTTTGGTGATAGAATATTTGTATAGCATCTCAAGTCCCGAGTCCTTTGGAAGAGCGGCCAGTGTTCTTAACTGCTGAGCCACACCCCAGCCTTGATGAGTTTTTGTTTTTTTGAGACAAATTCTCTTCGTTTAATCCTGGCTGTCTTTGAACTTGCTATAGAGGAGGCTGTCCTCAGACTCTGAGAGATACTCCTTTCTCAGATACCCATGTGCTGGGATTACAAGTGTGTGTCACCGTGTCCAGATTTTATCCTTTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCAAAAGATTTTATCCTTTTGCTATCATTTTCATACACAAAAGCCTAAGTTGGAATGTCTTTTGTTTATGGATAGAGATTATAATTAACTGATCAGCTCTATGCTTTTTTTTTTTTTTTTTGTAAAAATAGTTTTATTCTCCTTCAAACATAAACCATCACTCTTGGGGAAAGGAAGGTGGCAGGGTGGTCCATGGCTCACTTGAATGGGGTGGGGGGAGATTAAGAAGTCCCACCCCACTGCCTAGCTGAGATAAGATTACATCCCTAACACTGTATATAAATATCTCCTTACATTAAAACAATTTTTCAGGTCTCACTTCACTCTACCCCAAGCTGGGAAACCATTATCTTCGGTTTGTGACGTTACAGATCCCAGAGAAAGGGTGTGGGGGAGAGGCAGACATGAGACAACTGGAAAACAGGAAGGGTATAAGGCAATGAGTAACAGGCCCCACATAGCCAAGCTCCCCTTTCCAGAAGAGCAAGGAGGGGCCCTTGTAGAGCAGAGAGGCCGTGTACCTGTGCGTATGATCAGCTCTATGCTTAACCATACTAGCAGCTCAAGAAAAAAAGGCAAGTTGAGGAAGGGCTGGTATCCTTCATAACTGGTCACAGTTGTGAGACTTGTCTTCAGGTAACCAGAGTGTTGTCTAGAGTTTTGGCCTGTTTCTCTGGTATTACTGACAGAAGTAAGGAGGGAAATTTCTCTCTTAGTTTATAGGAACAGCAGTTTTAGTTCAGAGTAATTTGTATAGACAATGATAGCAGGATTATGTGGAAGATGAAACTGTTTGTCTCAGGAAGCACAGGGCTAGGACTTTGCAGAACTTTCCCCAAAACACTACTAGCTGGAGGCAAATATTCAGCATGCAGTCTTATATGTGACACTTACAATGGAACCATAATAGATTCTGGTGGGGGCAAGTGTGTGGCAGAGCACAGACCCTTCCGTGGTATCCCCTCTTTGATGAAGTCTTTTATTTTCCTGACCTTGATGAGCCTATTCTTTTTATAGGCAAGAGGAAACTAACATTTATATTATCTGTTTCTTGGTACAG
Seq C2 exon
GTACCAAAACCAAGAACCTAGAGTTATTGATTCCTAAAACAGAGATATGTGATGACTCGGATAAGCCCCCTATGATTTTAGGAAGAATCCAGAAAGGTGACCTTCAAAGCTCTGAGCTAGGAGAATCTTGTGAAAAGGGAAATATGTTTAAAAAGCTGAGAATAAGGAGAGAAAAAGGAGATTTGAGAAAAGTGAAAGACTGCCCATTGTCTGGAAGCTTCCAAGACGAGGAAGAAGAGAAATCTAAGAAAACTAGGGGGAAATATAGCCTTAGTTCTGCTCCTGCTAAAAAACAGAAAATACAGCCTGGGCAGAAGCCGTTTACGTGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATCTTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTTGAGTGTCATGAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTTGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTTTGTGGAAAATGTGGGAAGGCTTTCACTCAGAGTTCAAATCTGACTGTTCATCAGAAAATTCACTCCTTAGAAAAAACCTTTAAGTGTGGTGAATGTGAAAAAGCCTTCAGTTACAGCTCGCAGCTTGCTCGCCACCAGAAAGTCCATATAACTGAGAAATGCTATGAATGCAATGAATGTGGAAAAACATTCACTCGAAGCTCCAACCTCATCGTCCATCAGAGGATCCACACTGGGGAGAAGCCTTTTGCTTGCAATGACTGTGGAAAAGCCTTTACCCAAAGTGCAAATCTTATCGTGCATCAGCGAAGCCACACTGGGGAGAAGCCGTATGAGTGTAAAGAGTGTGGGAAAGCCTTCAGTTGTTTTTCTCACCTCATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTACGACTGCAGCGAATGTGGAAAAGCCTTCAGTCAGCTCTCTTGCCTTATTGTCCACCAGAGAATTCATAGTGGAGATCTCCCTTATGTATGTAATGAGTGTGGGAAGGCCTTCACTTGTAGCTCATACCTACTGATTCATCAAAGAATCCATAATGGGGAAAAACCTTATTCTTGTAACGAGTGTGGGAAGGCCTTCAGACAGAGGTCAAGCCTCACTGTCCACCAGCGAACCCACACCGGAGAGAAGCCCTATGAATGTGCAAAGTGTGGTGCAGCTTTTATTTCTAACTCACACCTCATGCGACATCACAGAACTCATCTTGTCCAATAGCAAGGAAGAGGGTGAAACCTTGCTCTTGGTCATAACCTACTGCTGCTAATAGCAGGCACCTCTGTTCTTTATTCTTCCTTGGCCAAAATGAGGACTGTACCTTTTAAAGTTATTTTTCTGGAAGGTAATGTAAACACACATTTCAAAGGCTAATTTAAAGAAAATAAAACTTAAACACCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032919:ENSRNOT00000040625:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF0009621=zf-C2H2=WD(100=5.6),PF0009621=zf-C2H2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]