Special

MmuINT0178542 @ mm9

Intron Retention

Gene
ENSMUSG00000057895 | Zfp105
Description
zinc finger protein 105 [Source:MGI Symbol;Acc:MGI:1277119]
Coordinates
chr9:122835428-122840146:+
Coord C1 exon
chr9:122835428-122835572
Coord A exon
chr9:122835573-122838717
Coord C2 exon
chr9:122838718-122840146
Length
3145 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTCTGTTTCTTGGTACAGGTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGTCAGGAAATGTTCCGGGAAATGGCAGTGGTGCTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCTTTGGGAGCTACTCGTTGGCAGGGACTCTGGCCGAGAGTCAAATCCTGGAGCTTCATGGGAACCCAACCCCAACAG
Seq A exon
GTAAAGTTCAGCTCCCTGGTCTCAGTCGCATTAAGACTGTGGATGGGTGTCTGCTTTCTCTTTTTGAGTCACATAGTGTGAAGTGTTGACCCTGTCAATCGTTCAGAGCTGCTCGCATGGTTGCCACGGTGCGTGACTCGTTTCACACAGGCTAAAGGCCACAGAGCTGAATTCTAACCTCACTTTTTCATCATGCTTACTGTTCAGAACTTTTCATGTCCACACACATGTAAACCCATGTCTTCATGTGTTTTATGGTTATTTATAAGTTGCAAACAAAGGATAGTGCTCTGTACATTTATTTTCATTTTCTTTTCTGAGATGGTCCCATGGCCCACACTAGCCCAGAATTCACTAAATAGACAAGACTAACCCTAACCTTGAGTGTTGGACTCCTGTCTCTACCTCCCAGGTGCTCCCATGTATGCTGGGATTAAATCTAAGGCTTCATTCATGGTAGGCAAACCATTCACCAATCAAGTTACATCCTCAGTCTTAAATGTCTTAAATCTTAAGAAAAGGCTCGACAGGTAAGAGCTCTAGGTGTTCTCCCAGAGGACTTGGGTTTAATTCCAAGCACCCAAATGGCAGCTCACACCTGTCTATAAGTCCAGTTCCAGTGGACTCCCTCAAAAATTCATGTAGGCAAAACACCAATACACATAAAATAAAATGAAATAATTTTTAAAAGCAACTTTAGGACTAGTGAGACAGCAAAATAGGTAAAGACTCCTGATGACCTAAGTTTGATCCTGAGACCCATGTAGTGGAAGAAAGCAATGTATTGACTCCCAGAAGTTGATCTCTGACCATTACACATGTGCTTTGGCAAGCTACCTCCATCTTTTAATAAATATAATTAAAATTCTTAAAAGATATCTTTAGCTTGGTATCATTGCCTTTAACCCCAATACTCTGGAGACAGCGACAGTTGAATCTCTCTAAGTTTGAAGCCAGCCTGGTCTACATAGCTGGTTCAGACCGACCAGGGTTACATAGTAAGACCCTGTCTCAAAACAAACAAAAAATACCTTCAATGTGATTTCATTAGTATGAAAATGGTTTAAAAAGTTAATTCAGGCACTGGTCATAGTGGCTCACTCCTTTAATCCCAGCACTTAGGAGGCAGAGACAGCTTAGATCCCTGAGTTCTAGGCCAGCCTGGTCTTCAGAGTGACCGAGGACTACACAGAGAAACCCTGTCTTAACAAATTAAACAATAGTTCAGGGCTATCAGATAGCCTAGTGATAAAGGCAGTTGTTCAGTCCCATGGGACTACATGGTAGAAAGAGTCAGCTCCTGCAGGTTGTCCTCTGACTTCCATATGCACACTGGCATATACACATATACACAAAATACAAATGCTGGAGGGTGAAGGTATCCAAGAAGCAGATGGAGGTGTTCATCTTTTCTGATTGTAAGAGACAACGCAGACTAAAAACAGTAAGGTGTCCTCATTAATTAAATCAATCATTTTTAATGTTTTTGTTATCATCTTGGTTTGTTGTTTTGTTTTGAGACAGGGTCTCTACATAGCCCTGGCTGTCCTGGAACTCATTTATGTAGAAGACCAGAGTAGCCTTGAACACACAGATAGCAACCTGCCAAATGCCTTCCAACTACTGAAATTAAAGGTTTATACCACAACACATTGCCCATGAAATCAGTCTTGATTAACTGTGGCAGAATTTTGCCTGTGAAAGAGGGTTGAGAATGTGTTTGCATGGGTCAGAAATGTCTCAAGAGGGAAAAATTATGCTTCATAACTAAAGAGGACACAAAGTAGCTTAGAGAACCAACCTCATGTAAATTTCAAATTTTTTTGTTTTTTATGCCAGTGTCTCCTGTAGTCTAAACTTTGAACCTTTGAACGTCCTGTCTCTACTTCTCAGATGTTGAGATAACAAGTGTATACTATCATGCCCACCTGGTATCTTTTTATGATTAGGCTTTAATTACTTTATGCATGTGTGTACCCACACCACAGTGCACATACAGAGGTCAGGAGACACTTTTGTGGAGTTAGTTTTGCCCTTCCCCTTTTAAATGGTCCCAGAGGTGGGTAGCAAGAATTTATACCAGCTAAGCATTATATAGATTCCATGTTTTTTTAAAGTAATGAAGGGTATGAATTTATAGGTCAAATTGTAGAGCACATATTTAACATATTTGCTGCCTTTTGTTTAGTCCTCTGCACCAGGAAAAAAAAAAAAGTAATAGGAAGTCAGATACTGACATGAGAACTTACTGATGCTTTGGCTGTGGTTTGGTGATAGGATATTTGTATGACATTGTAAGTCCCAAGTCCTTTGGAAGAGCAGCCAGTGTTCTTAACTGCTAAGACACCCCTAGCCTTGGTTTGGTTTGGTTTTTGAGACAAAGTATCTCTGTTTAATCCTCACTGTCCTGGAACTTGCTGTAGACTAGGCAGGCTTTCCTCAGACTCAGAGCCAGCCTTCTTTCTCGGTTACCCATGTGCTGGGATTACACATGTGTGTCACCATGTCCAGATTTTATCCTTTTGCTATCATTTTCACACACACAAAAGCCTAAGTTGGAAGGCCCTTTGTTTATGGATAGGGATTTTCTATAATTAACTGATCAGTGCTATGCTTATCTACACTAGCCAGCTGCTCAAGGAAAAAGACGGGCTGTGGAAAGGTTGGTATCCTTCCTAGCCAGTCACAGTGGTGAGACTTGTCTTCTGATAACCTGAGTGTCGTCTAGAGTTTTGGTCTGTTGCTCTGGTTAAGTGTCTGGTATTGCTGACAGAATTAAGGAAGGAAATTTCTCTTTTACTGTACAGTGGTTTGAGTTCAGAGTAGTTTGTATGGAAAATGATAGCAGGATTATGTGGAAGATGAAACAGTTCATCGCAGGAAGAACAGGGCCTGGATCTGAAGTTTCCAGAACTTCCCCCAAAACACTACTAGCTAGGGACAAACGTTCAGCATGTGGCCTTATATGTGACACTCTTACCAGAACCATAATAGATTCTGGTGAGGGCAGGTGTGTGGCAGAACACAGACCCTTCCGTGTTATTCTTCTCTTTGATGAAGTCTTTTATTTTCCTCACCTTGGTAAGCCTGTTCTTTTTATAGGTCAGAGGAAACTAACAATTATATTTTCTGTTTCTTGGTACAG
Seq C2 exon
GTGCCAAAAGCAAGAACCTAGAGTTATTGATTCCTAAAAAGGAGATAAGTGATGACTCGGAGAAGCCCCCCATGATTTTAGGAAGAATCCAGAAAGGTGACCTTCAAGGACCTGAGTTAGGAGAATCTTGTGAAAAGGGAAATGTGTTAAAAGGGCTGAGGATAAAGGAGGAAAAGGGAGATTTGGGAGAAGCAACAGTGAAAGACTGTCCATTGTCTGAAAGCTTCCGAGACGAGGAAGAATCCAAGAAGTCTAGGGGGAAATACAGCCTCAGATCTACTCCTGGTAAAAATCAGAAAATACAGCCCGGGCAAAAACCGTTTACATGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATCTTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTCGAGTGTCATGAGTGTGGGAAGGCCTTCATTCAAAGTGCAAACCTCGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTCTGTGGAAAATGTGGGAAGGCTTTCACTCAGAGTTCAAATCTGACTGTCCATCAGAAAATCCACTCCTTAGAAAAAACCTTTAAGTGTAGTGAATGTGAGAAAGCCTTCAGTTACAGCTCGCAACTTGCTCGGCACCAGAAAGTCCATATAACCGAGAAATGCTATGAATGCAATGAGTGTGGAAAAACCTTCACTCGAAGCTCCAACCTCATCGTCCATCAGAGAATCCACACTGGGGAGAAGCCTTTCGCCTGCAGTGACTGTGGCAAAGCCTTTACTCAGAGTGCAAATCTTATTGTGCATCAGAGAAGCCACACTGGTGAGAAGCCGTATAAGTGTAAAGACTGTGAAAAAGCCTTCAGTTGTTTTTCTCACCTTATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTATGACTGCAGCGAATGTGGGAAAGCCTTTAGTCAGCTATCTTGCCTTATTGTCCACCAGAGAATTCATAGTGGAGATCTCCCTTATGTGTGTAATGAGTGTGGGAAGGCCTTCACTTGTAGCTCATACCTACTCATTCATCAAAGAATCCATAATGGGGAAAAGCCTTATTCGTGTAATGAGTGTGGGAAGGCCTTCAGACAGAGGTCGAGCCTCACTGTCCACCAGCGAACCCACACAGGAGAGAAGCCCTATGAATGTGCAAAGTGTGGTGCAGCTTTTATTTCTAACTCACACCTCATGAGACATCACAGAACCCATCTTGTTGAATAGCAAGGAAGAGTACGATGCCCTGCTTTTGGTCATAACCTACTGCTCCTAATAGTAGGCACTTCTGTTCTTTATTCTTCCTTTGACAAAATGAGGACTATACCCTTTAAAGTTATTTTTCTGGAAGGTAATGTAAACACACATTCAGAGGCTAATTTAAAGAAAATAAAACTTAAACACCTAAAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057895-Zfp105:NM_009544:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.541 A=NA C2=0.194
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF097235=Zn-ribbon_8=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000079840





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000123112
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:44652702-44658700 
ALTERNATIVE
HsaINT0186993
(ZNF35)
Human
(hg19)
chr3:44694194-44700192 
LOW PSI
HsaINT0186993
(ZNF35)
Rat
(rn6)
chr8:132004822-132008557 
ALTERNATIVE
RnoINT0167714
(Zfp105)
Cow
(bosTau6)
chr22:16497988-16501214 
LOW PSI
BtaINT0165359
(ZNF35)
Chicken
(galGal4)
chrLGE64:729155-729180 
Chicken
(galGal3)
chr1:95222976-95223347 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"