MmuINT0178542 @ mm10
Intron Retention
Gene
ENSMUSG00000057895 | Zfp105
Description
zinc finger protein 105 [Source:MGI Symbol;Acc:MGI:1277119]
Coordinates
chr9:122926310-122931028:+
Coord C1 exon
chr9:122926310-122926454
Coord A exon
chr9:122926455-122929599
Coord C2 exon
chr9:122929600-122931028
Length
3145 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTCTGTTTCTTGGTACAGGTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGTCAGGAAATGTTCCGGGAAATGGCAGTGGTGCTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCTTTGGGAGCTACTCGTTGGCAGGGACTCTGGCCGAGAGTCAAATCCTGGAGCTTCATGGGAACCCAACCCCAACAG
Seq A exon
GTAAAGTTCAGCTCCCTGGTCTCAGTCGCATTAAGACTGTGGATGGGTGTCTGCTTTCTCTTTTTGAGTCACATAGTGTGAAGTGTTGACCCTGTCAATCGTTCAGAGCTGCTCGCATGGTTGCCACGGTGCGTGACTCGTTTCACACAGGCTAAAGGCCACAGAGCTGAATTCTAACCTCACTTTTTCATCATGCTTACTGTTCAGAACTTTTCATGTCCACACACATGTAAACCCATGTCTTCATGTGTTTTATGGTTATTTATAAGTTGCAAACAAAGGATAGTGCTCTGTACATTTATTTTCATTTTCTTTTCTGAGATGGTCCCATGGCCCACACTAGCCCAGAATTCACTAAATAGACAAGACTAACCCTAACCTTGAGTGTTGGACTCCTGTCTCTACCTCCCAGGTGCTCCCATGTATGCTGGGATTAAATCTAAGGCTTCATTCATGGTAGGCAAACCATTCACCAATCAAGTTACATCCTCAGTCTTAAATGTCTTAAATCTTAAGAAAAGGCTCGACAGGTAAGAGCTCTAGGTGTTCTCCCAGAGGACTTGGGTTTAATTCCAAGCACCCAAATGGCAGCTCACACCTGTCTATAAGTCCAGTTCCAGTGGACTCCCTCAAAAATTCATGTAGGCAAAACACCAATACACATAAAATAAAATGAAATAATTTTTAAAAGCAACTTTAGGACTAGTGAGACAGCAAAATAGGTAAAGACTCCTGATGACCTAAGTTTGATCCTGAGACCCATGTAGTGGAAGAAAGCAATGTATTGACTCCCAGAAGTTGATCTCTGACCATTACACATGTGCTTTGGCAAGCTACCTCCATCTTTTAATAAATATAATTAAAATTCTTAAAAGATATCTTTAGCTTGGTATCATTGCCTTTAACCCCAATACTCTGGAGACAGCGACAGTTGAATCTCTCTAAGTTTGAAGCCAGCCTGGTCTACATAGCTGGTTCAGACCGACCAGGGTTACATAGTAAGACCCTGTCTCAAAACAAACAAAAAATACCTTCAATGTGATTTCATTAGTATGAAAATGGTTTAAAAAGTTAATTCAGGCACTGGTCATAGTGGCTCACTCCTTTAATCCCAGCACTTAGGAGGCAGAGACAGCTTAGATCCCTGAGTTCTAGGCCAGCCTGGTCTTCAGAGTGACCGAGGACTACACAGAGAAACCCTGTCTTAACAAATTAAACAATAGTTCAGGGCTATCAGATAGCCTAGTGATAAAGGCAGTTGTTCAGTCCCATGGGACTACATGGTAGAAAGAGTCAGCTCCTGCAGGTTGTCCTCTGACTTCCATATGCACACTGGCATATACACATATACACAAAATACAAATGCTGGAGGGTGAAGGTATCCAAGAAGCAGATGGAGGTGTTCATCTTTTCTGATTGTAAGAGACAACGCAGACTAAAAACAGTAAGGTGTCCTCATTAATTAAATCAATCATTTTTAATGTTTTTGTTATCATCTTGGTTTGTTGTTTTGTTTTGAGACAGGGTCTCTACATAGCCCTGGCTGTCCTGGAACTCATTTATGTAGAAGACCAGAGTAGCCTTGAACACACAGATAGCAACCTGCCAAATGCCTTCCAACTACTGAAATTAAAGGTTTATACCACAACACATTGCCCATGAAATCAGTCTTGATTAACTGTGGCAGAATTTTGCCTGTGAAAGAGGGTTGAGAATGTGTTTGCATGGGTCAGAAATGTCTCAAGAGGGAAAAATTATGCTTCATAACTAAAGAGGACACAAAGTAGCTTAGAGAACCAACCTCATGTAAATTTCAAATTTTTTTGTTTTTTATGCCAGTGTCTCCTGTAGTCTAAACTTTGAACCTTTGAACGTCCTGTCTCTACTTCTCAGATGTTGAGATAACAAGTGTATACTATCATGCCCACCTGGTATCTTTTTATGATTAGGCTTTAATTACTTTATGCATGTGTGTACCCACACCACAGTGCACATACAGAGGTCAGGAGACACTTTTGTGGAGTTAGTTTTGCCCTTCCCCTTTTAAATGGTCCCAGAGGTGGGTAGCAAGAATTTATACCAGCTAAGCATTATATAGATTCCATGTTTTTTTAAAGTAATGAAGGGTATGAATTTATAGGTCAAATTGTAGAGCACATATTTAACATATTTGCTGCCTTTTGTTTAGTCCTCTGCACCAGGAAAAAAAAAAAAGTAATAGGAAGTCAGATACTGACATGAGAACTTACTGATGCTTTGGCTGTGGTTTGGTGATAGGATATTTGTATGACATTGTAAGTCCCAAGTCCTTTGGAAGAGCAGCCAGTGTTCTTAACTGCTAAGACACCCCTAGCCTTGGTTTGGTTTGGTTTTTGAGACAAAGTATCTCTGTTTAATCCTCACTGTCCTGGAACTTGCTGTAGACTAGGCAGGCTTTCCTCAGACTCAGAGCCAGCCTTCTTTCTCGGTTACCCATGTGCTGGGATTACACATGTGTGTCACCATGTCCAGATTTTATCCTTTTGCTATCATTTTCACACACACAAAAGCCTAAGTTGGAAGGCCCTTTGTTTATGGATAGGGATTTTCTATAATTAACTGATCAGTGCTATGCTTATCTACACTAGCCAGCTGCTCAAGGAAAAAGACGGGCTGTGGAAAGGTTGGTATCCTTCCTAGCCAGTCACAGTGGTGAGACTTGTCTTCTGATAACCTGAGTGTCGTCTAGAGTTTTGGTCTGTTGCTCTGGTTAAGTGTCTGGTATTGCTGACAGAATTAAGGAAGGAAATTTCTCTTTTACTGTACAGTGGTTTGAGTTCAGAGTAGTTTGTATGGAAAATGATAGCAGGATTATGTGGAAGATGAAACAGTTCATCGCAGGAAGAACAGGGCCTGGATCTGAAGTTTCCAGAACTTCCCCCAAAACACTACTAGCTAGGGACAAACGTTCAGCATGTGGCCTTATATGTGACACTCTTACCAGAACCATAATAGATTCTGGTGAGGGCAGGTGTGTGGCAGAACACAGACCCTTCCGTGTTATTCTTCTCTTTGATGAAGTCTTTTATTTTCCTCACCTTGGTAAGCCTGTTCTTTTTATAGGTCAGAGGAAACTAACAATTATATTTTCTGTTTCTTGGTACAG
Seq C2 exon
GTGCCAAAAGCAAGAACCTAGAGTTATTGATTCCTAAAAAGGAGATAAGTGATGACTCGGAGAAGCCCCCCATGATTTTAGGAAGAATCCAGAAAGGTGACCTTCAAGGACCTGAGTTAGGAGAATCTTGTGAAAAGGGAAATGTGTTAAAAGGGCTGAGGATAAAGGAGGAAAAGGGAGATTTGGGAGAAGCAACAGTGAAAGACTGTCCATTGTCTGAAAGCTTCCGAGACGAGGAAGAATCCAAGAAGTCTAGGGGGAAATACAGCCTCAGATCTACTCCTGGTAAAAATCAGAAAATACAGCCCGGGCAAAAACCGTTTACATGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATCTTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTCGAGTGTCATGAGTGTGGGAAGGCCTTCATTCAAAGTGCAAACCTCGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTCTGTGGAAAATGTGGGAAGGCTTTCACTCAGAGTTCAAATCTGACTGTCCATCAGAAAATCCACTCCTTAGAAAAAACCTTTAAGTGTAGTGAATGTGAGAAAGCCTTCAGTTACAGCTCGCAACTTGCTCGGCACCAGAAAGTCCATATAACCGAGAAATGCTATGAATGCAATGAGTGTGGAAAAACCTTCACTCGAAGCTCCAACCTCATCGTCCATCAGAGAATCCACACTGGGGAGAAGCCTTTCGCCTGCAGTGACTGTGGCAAAGCCTTTACTCAGAGTGCAAATCTTATTGTGCATCAGAGAAGCCACACTGGTGAGAAGCCGTATAAGTGTAAAGACTGTGAAAAAGCCTTCAGTTGTTTTTCTCACCTTATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTATGACTGCAGCGAATGTGGGAAAGCCTTTAGTCAGCTATCTTGCCTTATTGTCCACCAGAGAATTCATAGTGGAGATCTCCCTTATGTGTGTAATGAGTGTGGGAAGGCCTTCACTTGTAGCTCATACCTACTCATTCATCAAAGAATCCATAATGGGGAAAAGCCTTATTCGTGTAATGAGTGTGGGAAGGCCTTCAGACAGAGGTCGAGCCTCACTGTCCACCAGCGAACCCACACAGGAGAGAAGCCCTATGAATGTGCAAAGTGTGGTGCAGCTTTTATTTCTAACTCACACCTCATGAGACATCACAGAACCCATCTTGTTGAATAGCAAGGAAGAGTACGATGCCCTGCTTTTGGTCATAACCTACTGCTCCTAATAGTAGGCACTTCTGTTCTTTATTCTTCCTTTGACAAAATGAGGACTATACCCTTTAAAGTTATTTTTCTGGAAGGTAATGTAAACACACATTCAGAGGCTAATTTAAAGAAAATAAAACTTAAACACCTAAAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057895:ENSMUST00000051667:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types