HsaINT0186993 @ hg19
Intron Retention
Gene
ENSG00000169981 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:13099]
Coordinates
chr3:44694049-44702283:+
Coord C1 exon
chr3:44694049-44694193
Coord A exon
chr3:44694194-44700192
Coord C2 exon
chr3:44700193-44702283
Length
5999 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
TTTTCTGTTTCTTGGTTCAGGTG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GGTCAGAACATATCCTGGGATATGGCGGTAGTCCTGAAAGCAACTCAGGAGGCACCTGCTGCTTCAACCCTTGGCAGCTACTCATTACCAGGGACTCTGGCCAAGAGTGAGATACTGGAGACTCATGGGACCATGAACTTTCTAG
Seq A exon
GTATGGTTCAGTTCCCTGATTCTGAATCTGACCATTGGGGTTTCTCAAAATCTTTTCAGAGACTGGTGGGCATCCAGTCTCCTAGGTTGACCAACAGAGTACTGAGGTATTGAAAGTGTCCAGGAAAGCTGGAAAGAGGAATGCTGAAATGCCTGTGCATTTGTCATGGGAAGTGGCTTATTTTGCACACAGGCTCAAGACACTAGACAAACATAGGTGTTGTGCTGAAACCTGATCAACACCAATATGGTACCAGGTTCAAGAGGCTGAAGAAGAGACCCAGAGCCAGCAAACAACATAGAATTTTACTAGGTGTTTATGTACAGGGTAGACAGTCTAGAGGCAGTGGACTGGGCACGGGAGAACCACATGGCCCAGTGGCACAGGCTGGACAGGAGAGCTGCAACTGCTTGCAAAAGGCATGCGGTTTATGTCGCATTTTCACTTAACACCCTCTCCCTAATGACCTCCACCTGGCAGCCTTAATTTAACCCAAAACAAGGGGCCTCAATCCCCTTTAAGGCCCGCATTCCACTGAAAGGGGTGGGGAATGGATAAGGAATGGATCTCCAGGTTGGCCACTTCTGGATTCCTTTGCTTGGAACTCCAAACTATATTCAGGTGTGTCTGCCATACAGGATCATTCTCAGGGTATGCTTAAGTTGTTGCCATCAGGTGTATTTACCATACAATAGGTGAATTCCAAACTCACTTTTTAGTGATATTTATTGTTCAATGAGTTTCATCTCTGTGCACACATGTAGGCACATGTCCTTTTTATACGCTTTGTAGTTAGCATAGGTTGGTGAGCCTGCAAGAGATGCTAGCCGAGGTAGGAACAGTCAACTTTTGTGGTGATTTTGAGCAAATGCCCTGGAGATGTTCTGTTTTCATAGATCTTTGTGCAAATTATAGAGGATTTTGAGCAGCTGTGTTAACCATAATGATGTTCAAAACTAGGTCTTCGTGAAGGGTACTGATGGCTTATCAACTTGTTCTCTCTAAGCTAGGACTAGAGAAAGGGTAGTATGTTCTAAAGATCTCACTGGCAGTGGCAGAAGCTTGCCTGTGGAGGAGTGACATATAAGTGAGGGTCAAGAATGCAGTAGCCATGAGTCCTGTGTTTCAAAGCACTTACTGGCTGATTGCCAAGCCCTATTCTTTTTATGAGTCTGCCAGATATTGAATATTTTGAACCCACTCTCCTCCCTAACCAGTTCCTCAGGCATCTGGGGACCAAGTCACTTTCTTAAACCAGTGCTATGGGGAAGACAAGGATCTCCACCTAGATTTTCTTGTCTCATATTTAATTATTCCCAAACTCTTAGCAGCTTCTGTTCCCCACTTTCTGCTTTGTGTTCCATTCTCTCTGGTGCATTCGCGTGCATGTCACTTATTTTCTGTCTCTGAGCTTTATCAGCCATTCATAGTCTTAACCCCAACAGCTGCACCTCATCAGGAATGGGCTCCCTTTTCCTACTTTGCCTCTTACCTCAAGACCATGTTCATACCCAAGACTTAGTATTTTGTGCTGCCAGCTATTTCCATGGCGATGGCAGGAACACTGCCAACACTATTTCCATGGCGATGTCAGCAGGCGATGGTGGGAACACTGAGCTCTATGTGTGAGAGATATCTGAGTGGGGTTGCTGCCCTGCCTGTAATAACTCTGTGACCTTGAGTAAGTCCCTTCTCTCTCTGGACCTCCATTTCCTGTTCTACAAATTGGGTGTGTTCATTAAGTACAGGATTTGTTGGCGGCCTCCTTCCTATGTGTCAGGCAGCGTGATAGGTGCTGGAGATACAGAAATGAATAAGACACAACCTTGCTCTTTTTTTAGCTGAAGGAGAACAGTTTCATCTTCATGATGAAATTGTATAATATACATGAAAGTGCTTTGGAAATTGTGATGTGTTACTGGGTTTTTAATGTCTGAGCAAGTTTTAACTGTAGTTTTCATATTTTAATTAATGTTGAATTTATTAAAGTTTATTCATTTAAAAACCAATTTTTAAGCCATTAAGCATAACTTTTTACTTCATCCATACATCTAGAAATATTTGTATAAAAGTGAGAACATTTGTATTTTTTCTTTAACTTATGTTCAGTTAAGCTTCAAATTTTACAGATTAAATTTTTTAAACATTTTGGCCGGGCGCAGTGGCTCAAGCCTGTAATCCTAGCACTTTGGGAGGCGGAGGCGGGTGAATCACCTGATATCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATTCAAAAATTAGCCAGGCATGGTGGTGCGTGCCTATAGTCCCAGCTACTTGGGAAGCTGAAGCAGGAGAATCGCTTGAACCCGGGAGACAGAGGTTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGGCAATAGAGCAAGACTCTGTCTAAAAAAATAAATTAATTAAAAATTTTAAACATTTAATTCTACCTGCTTATCAAATTTCTTTATATAAAACATAATTACAAATTTGATATCTTTAGTTCTTTAAAACATTCCAAACACCTAACTGGGCAGACTTACAAATCTTGTAAATAAAATCTTGATAAACACAGCTGTTATAAATCTAATGAATTGGACTTATAAATTTAGTAAATCAAATTACCCTTCTTATCTCAGAATACAGTCACCAGCTAAGGTGGCAGGCTTATGTAGCATTTCAGCTATCTTTAAAAAAAAAAAAAGAGTGAAAGAAGAGTATTGATTTAAAAACTATGGCTATGCCTGTGTTCTAGTTGGTCACAAATTAGTTTTTGTTTTAGTTTTTCATTATTTCTGTACTTAATTTAATTTCTCTAGAGCTACAGTAATCCTACATGTTTTTTAAAAAAAGGAAAAATACCATTTCAAATAAGCCAAGGTTATACGCCCGGATTATTTGCTGATTAATCTTTTTACCCAAAGAAATTTGAACTTGACTATACCAGATGGACCCTAATTCTCTTTTCTTAGGCACTTGCCAAGACCCCAGGTCTTACTTTACTCAGTGATGAATCACTTGCATGAAAACCTTCTAGGCTACAGTTGCACCTGGTTTTGTAATGGTTTTGACATGAGACATTATTCAGATAGAAGGAATTGTTTCCGTTATTGGCTCTAATCAGTTTAGTAGTTCCCATTGATCTTCATGCCCAACATTCTAAATCTCCCAGTAAGGAGGGTAGGAGTGAAAGTCAGGGAGACAGTGCAGCTATGAACTAAAGTTTTCATGGGCTCTGTTTCTGTTGGAGAGATGCCCAGCTGGGGTATGGGAGGCCCACGTGTCAGTGATGGGGAGTTAAAGCAAAAGAGGAGGTGAAAAGAATCAAGGGAGGAGACGTTGGATGGGAGGAGAATAAAGTGGGATGTAGGTGATAAAGTAACAGTAGAGAACACAAAGAGAAGCAAGCAGTCAGCAAAAGAAAAACAGAAGAGGCATGAAACTGTATATGGAAAAATTCAAAATATTTCACACAAAAAATTAAAAAACAGGAGAGGAGAGAGATGAAGAGTCAGTAGGGGGTCGAGATAGCAGGAAAAAATAAGCAGCAGCAGAAGAAAAGATATAAAAGCAAGTGAACTACAGAGAGAAAAACAGAACATTTTTAAAAAGAGGGAGCTAGCAGAACAGTAGGAATAGAAATAACCAGAAAAAGTTTAGCATTTCAGATTTTTTTTTTTTTTTTGAGATGAGTTTCGCTCTGCTGCCCAGGCTGGAGTGCAGTGGCACGATTTCGGCTAACTGCAACCTCTGCCTCCTGGGTTCAATTGATTCTTACGCCTCAGCCTCCAGAGCAGTTGGGATTACAGGTGCCTGCCACAACACCCACCTATTTTTTTTGTATTTTTCCTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGTTTCAGCCTCCCAAAGTGGTGGGATTACATGAGCCACTGCACCCGGCTTTTTTTTTTTTTTTTCTTTGAGATAGAGTCTTGCTTTGTCTGGCCCAGGCTGGAGTGCAAGTGCAGTGGTGCAGTCTCAGCTCAGTACAGCCTCCACCTCCCAAGTTCAAGTGATTATCCTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGCACCACCACACCTGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCCGTTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTCAGCCTCCCGAAGTGCTGGGGTTACAGGCATCAGCCACTGTGCCTGGCCAGCATTTCAGATATTTATTGTTTGTCATATCTGGGGCTCTACTGTATCCAGCACTTGGGCATTTCTTTCCTCTGACACTGCTCATCTTGTCTGAATGATTGTGATAGAATTTCAGATTACCATAGTCTTAACCAGGCAATCAAACCAGGCTGTTTTCCTGCCCCCAATATTGCTTTGTACCACCCCAACATCCTTGTCCCACCCACTCATATCATTGGTTGGATGGTCATCCTATAGAATATTTCCCTCTCATGGGTGCTAGTCTCTCCCCTGCGCAGTAGCAGCAGTTATAACCTGAAGCTCACAGCACCACTGCTTATTTCTGAGCTGACATCACCAGTGGGAATACCTCCCTCCTCTACAGGCTTGCCACCCATTCCTGTTACCCTTTATTTCACTTGCCTTATTTCTTGAGCTTGGTTTAATTGACAAACACTTCTTAAGGGTTCACTGTGCCAAAACTGGATTACATGGGTGCACATTTCAAGGTTAAGGAAAGTGAGTGTGCAGAGGAGACAAACATAAAGAACTATGATGTTACTGATAGCAGGACCCCTTTTTGACACCATTAGGTTCTGAAGCAATGTAAAGCATCCAGAGACTAATCAGTGTCATAAAGCTTCAGGGTGTTTTGAAGTTCTCATGATATTTTCTGGCATTGTGGAGCAGGCTATGCCATAACTCAACAAGGTCAGCTTTCCTTGACACAATGCTAAGCTGTTCCCCTGACACAAGGGTAAGAGTTTGCCATGTACAGTTTCTTTTTTTATTCTCCTAGTGTAGCTGTCTATCACCATAGCAGCTCCCCTCCCCTAAGGGTTCATCTTTCCTTCTGGCCCCTCACAACATCATCAGTCAGCCTGAAAGTTGCTGCACACATTCAGAGCACTGACTGTATTCCAGGCAATATCTGAGTAGTTGACATAGAGTAACTCCATTAATCTACTCATGGCCTTATGAGGTAGATACTATTAGTATCCCTGTTTTAGAGATTGGGAAACTGAGGCACACAGGAGTTAAGTAGCCCAAAGTCATGGAGCTAGTTAGTGTCAGAGCAGAGATTTGAAACCAGGCAGTCTAGCTCTAGAATCCATGTTCTTAACCTGTATGCTGCAGGACCTCGCAGTGTTTCATATGGTTTTGGCTGCTGTGGCTGTCTTGGCAGCCAGTGTTACCCTTTCTGTCCGTGCTTATCCTTTCTTTGATATCCAGCATCCTCAGACACAGAAACCTCAGTTGCTAGATCTTTGTTTACAGGTAGCAAATCACCCTAATTAACTGGTGGGTTGCAAGCAAATCCACACTAAGTAGCTAAGGTAAGAAGGCAAGCCTAGGGAGAGGCTTGTGTCCTTCATAACTGGTCTTTGTTGCAAGGGCAGTCATCATACAGCCAGCAGGAGCACTGTCTGGAGATTGGCCCTCCCTGGCATGAGGCAGCGGGCAGCGGGGTTAAGTGTCTAATGGAGGCAAGTGGAAGTGCTGGAAAGACCACGAGTCAGTGGGTTCTGCCATAGGTAGAGGGGAGGGCAAAGCCCCAGCTGAAGAACCTAGAGAGGAGAGGTAACATGTGATGGGATTCTCTTCTTTGATGAAGCCATTTTGTGGAGGTGCTGAAATCACATACTTCGTTTTATGACTTGATGATCCTATTCTTTTTCTAGGCCAGAGAAAGCTAACATTTGTATTTTCTGTTTCTTGGTTCAG
Seq C2 exon
GTGCTGAAACCAAGAACCTACAGTTACTGGTTCCAAAAACTGAGATATGTGAGGAAGCTGAAAAACCCCTCATCATATCAGAAAGAATCCAGAAAGCTGATCCTCAAGGACCTGAGTTAGGAGAAGCTTGTGAAAAGGGAAACATGTTAAAGAGGCAGAGAATAAAGAGAGAAAAGAAAGATTTCAGACAAGTGATAGTGAATGACTGTCACTTACCTGAAAGCTTCAAAGAAGAGGAAAACCAGAAATGTAAGAAATCTGGAGGAAAATATAGCCTTAATTCTGGCGCTGTTAAAAATCCAAAAACCCAGCTTGGACAAAAGCCTTTTACGTGTAGCGTGTGTGGGAAAGGATTTAGTCAGAGTGCAAACCTCGTTGTGCATCAGCGAATCCACACTGGAGAGAAACCCTTTGAATGTCATGAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTCGTTGTGCATCAGAGAATCCACACTGGACAGAAACCTTATGTTTGCTCAAAATGTGGGAAAGCCTTCACTCAGAGTTCAAATCTGACTGTACATCAAAAAATCCACTCCTTAGAAAAAACTTTTAAGTGCAATGAATGTGAGAAAGCCTTTAGTTACAGCTCACAACTTGCTCGGCACCAGAAAGTCCACATTACGGAAAAATGCTATGAATGTAATGAATGTGGGAAAACATTTACTAGGAGCTCAAACCTCATTGTCCACCAGAGGATCCACACTGGGGAGAAGCCCTTTGCCTGTAACGACTGTGGCAAAGCCTTTACCCAGAGTGCAAATCTTATTGTACATCAGCGAAGCCATACTGGTGAGAAGCCATATGAGTGTAAAGAGTGTGGGAAAGCCTTTAGTTGTTTTTCACACCTTATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTACGACTGCAGCGAATGTGGGAAAGCCTTCAGTCAGCTCTCTTGCCTTATTGTCCACCAGAGAATTCACAGTGGAGATCTTCCTTACGTGTGTAATGAATGTGGGAAGGCCTTCACATGTAGCTCATACCTACTTATTCATCAGAGAATTCATAATGGAGAAAAACCTTACACATGTAATGAGTGTGGGAAGGCCTTCAGACAGAGGTCGAGCCTCACCGTGCACCAGAGAACCCACACTGGGGAGAAGCCCTATGAATGTGAGAAGTGTGGTGCAGCTTTCATTTCCAACTCACACCTCATGCGACACCATAGAACCCATCTTGTTGAATAACAAGTAAGGAAGAGGAAGACCTCCAGCATTGGTCATAACCTTCTGCCTCCCTAATGAGACACCTCTTTGCTGTTTTCTTCCTCCTCTATAAAAGTGAGGGCTGTGTCCTTAAAAGTTATAGTTTTCAGGAATGCAGCAGAAGACACAAGAAAAGCATTTCAGAGGCTAATTTAAAACAAAAAGTAAGCACCTAAAGGCAAGGACTTTGTTTTAACTGTACCTTAAGCGGTCATGTTCTCTGAAGTGGAATGTGGCTTTCCTAGGAATGGGTCGTACAAAGCTAAGTGGTAATGATGCTATTTGGGGAAAGGTCTTTTTTGCTTAATTTTGTTTTTTAAAACTCTGATGATTGCTTGAGCAACAGGCAGGTTATCTGCCTGGTTGAATTCTGGTTGAACCGTGTATTCTAATATTTCTGGTTAAGTGGTGACTGGGTAAGGAAACCACTTGGGGTAGCAGTTCAACAATTCACTTACGAATGTTTATAAGCTTTCCATTTCCTAGGTAATTTTTTAAAAGCCAGTCAAAACAAAAACTTTACTGAAAATGGACAGAAATAGGAAATGGACTTTTTCCTTACTGTCTATACCTCCTGAACCTTGGTATTGTAAAGATCTGGGGACCTCTGGGTCTGTTCTGACCATTCCCTAGTCTCCATGGCCAAGCACTCAAGGATTGATGGACACCACACACCAGCTATATTCATTTGCCAAGATCAACAGCTCCTTCTCCAAACAACTCAAGCCCCCAATTCCCATCGCATTCCATTTGGGTGAGATGCAACTAACAGCCCCTTCCTGGATGAAGGAGTCAAAGAATAAAGCTTGCCTAGAGGCATGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169981-ZNF35:NM_003420:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF127602=Zn_Tnp_IS1595=WD(100=12.0),PF0009621=zf-C2H2=WD(100=5.5),PF0009621=zf-C2H2=WD(100=5.5),PF097235=Zn-ribbon_8=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)