BtaINT0165486 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006954 | ZNF432
Description
Bos taurus zinc finger protein 432 (ZNF432), mRNA. [Source:RefSeq mRNA;Acc:NM_001192232]
Coordinates
chr18:58153048-58155232:+
Coord C1 exon
chr18:58153048-58153183
Coord A exon
chr18:58153184-58155145
Coord C2 exon
chr18:58155146-58155232
Length
1962 bp
Sequences
Splice sites
5' ss Seq
ACAGCTCCC
5' ss Score
-25.02
3' ss Seq
TTCCCATAAACGGTATCGAGTCA
3' ss Score
-14.01
Exon sequences
Seq C1 exon
GAAATCTTGTCATTCAAGGATGTGGCTGTGGACTTCACATGGGAAGAGTGGCAGCTCCTGACCCCTGCTCAGAAGACCCTGTACCGGGATGTGATGCTGGAGAACTATAGCAACCTGGTGTCCGTGGGTGAGGACA
Seq A exon
GCTCCCTTGGGTCCTTCAGAGGGTCCCCAATCAGTGGCTTTTATTTTCTCAGCTGCTTAAACTTTGAAATACTGCAGTGCCCTATGGCAGATTCTTATTGCCTCTTCTAGCTCCTGTTGAAAGGATATATACAATGTGCTATGAACTGTTTTTATGCCCAACATGACTGACACCAAATGTCTGGGTTTTTTCTATACTAGTAACCAATTCTCCTACTCTCCATGTACAGCCTGGGTGTCCCGCAATTCAATCCTCTTTTGACAGTAACCACCCAAATTCAGCATCATACTCCAGAGGCTTACAGGCTCACTTCAGATGTTAGTTGAACATATTAGGTGTCCAGGGTACCCACACTTCTGTTTGACTTGACTATAAACTGAGCCTTTGGGACTTCCCTAGTGGTCCAGTGGTTGAGACTTCGCACTTCAAATGCAGGGAGCACAAGTTTGATCCCTGGTTGGGAAACTAAGGTCCCACATGCCACGGGGCATGGCCAAAAAAAAAAAAAAATTACATTAAAAAAAAATATCAAGTATTCCCATTCTCCACCCCTCAGCATCTGACAGTTAGAATGGCTGACAGAACTCAGGAAAGCACTTAACTTACCATTACCAGTTTATTATAAAGGATAAAACTCAGGAAAAGCCAAATGGAAGAGATGCTGGGGCAGAGTTAAGGGGGAGGGATCATGGTCCTTCCACGAGTGCTCCAAGTGTGTCACCTTGATGTGGTCATCAACCCAGAAGCTCCCCCAGCCTGGTTGTGTAAGGGGTTTTATGCTGATTTCATTGTGAAGGCATGTTTTTTTAAGTCACTGGCTGTGGGTGGTTAACTCAGTCTCCAGTCCTCTCTTTCTCTGTGGCGGGGGTGAAAAGTGAAAGAAAGTGAAAGTCTCTCAGTCATGTCTGACTCTTTGCAACCTCATGGGCTATACAGTCCACAGAATTTTCCAGGCCAGAATACTGGAGTGGTTAGCCTATCGCTTCTCCAGCGGATCTTCCTGACCCAGGAATCGAATGGGGGTCTCCTGCATTGCAGGTGGATTCTTTACCAACTGAGCTATCAGGGAAGCTCATGGCAGGGGTAGGAGGAGCTGAAATTTCTAACCTTCTGTTCATGCCTTGGTTTTTCTGGCAGCCAGTCTCCACTCTTAAACTCCCTAGGGCCCCTAGTCACCAGTCATCTTATCAGCACACAGAAGACACCCATCACTCTTGGAGACCAAGGGTGTTGGAAGTTCTTGTGCCAGCAACTGGAATTTGACCAAATGCTGTAACAAAAGAGGTTTCTGCCATGCCTCTCACATAGGAAATTACAAGGGCTTCATTTTTATTTTAATTTTAAAAATATTTATTTGGCTGTGCCAGGTCTTCCCAGGTGGCGCTAGTGGTAAAGAACCCGCCTGCCAGTGTAGGAGATACAAGAGACTATGGTTTGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGTCATGGCAACCCACTCCAGTATTCATGCTGAAGAATCCCATGGACAGAGAACCTAGCGGGTTAGAGTCTGTAGGGTCACAAAGAGTCAGACACAACTGAAGTGACTTAGTACACACACCAGGTCTTAGTTGTGGCAAAAAGGATCTTCAAGCTCTGTTGTGGCATATGGGATCTTTAGTTACAGCATATGGGATCTAGTTCCATGACCATGGATCAAACCCAGGCCCTCTGCATTGGGAGCTTGGAGTCTTAGCCACTGGACCACCAGGGAAGTCCCTATGAGGGCTGCAGAAGCTCTCTGCCAGAAACCATGGGTGGAGACCAAAGCGATATCATCATATCATAACATCCCATGAGTCTCTCCTGAGTGCAAAGCCTCTGCTTGGCAGATGTGAAAACCAATCCCTCAAATGTAAAATTCTCCTGTCTTGACCAGCCCCAGCCCAATTCAGTGGGACTAAGTCTTCTATCATTTCCCATAAACGGTATCGAG
Seq C2 exon
TCAGCAAATCAGATGTGCTGTTCAAGTTGGAACAAGGGGAAGAACGATGGATGACAGAAGATGAAATACACAGTCATACCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006954:ENSBTAT00000031814:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=89.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCAAGGATGTGGCTGTGG
R:
CTGGCCAGGTATGACTGTGTA
Band lengths:
214-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development