HsaINT0187225 @ hg38
Intron Retention
Gene
ENSG00000256087 | ZNF432
Description
zinc finger protein 432 [Source:HGNC Symbol;Acc:HGNC:20810]
Coordinates
chr19:52040488-52041606:-
Coord C1 exon
chr19:52041480-52041606
Coord A exon
chr19:52040584-52041479
Coord C2 exon
chr19:52040488-52040583
Length
896 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTATTATTTCCCGTAAACAGGTT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GAATTGCTGACACTGGAGGATGTTACTGTGGAGTTCACCTGGGAGGAGTGGCAGCTCCTGGGCCCTTTTCAGAAGGATTTGTACCGGGATGTGATGTTGGAGATCTACAGCAACCTGCTATCAATGG
Seq A exon
GTGAGGACAGCTGCTCTGTGTCACCTGGAGGGTGCCCAGTCTGTGGCCTTTGCTTTCTCAGTTGCTTACCCTTGGAAGTTACTGCAGTGCTCTGAATATTAGATTTTTGGCACATCCTCTGGCTTCTGATAAAAGGATATACCGTCACCCCTCAGTGTCCAAGAGGGATTGGTTTCACAACTTTCCATGGATATGAAATCCACAGATGCTCAAGTCTCATATAAAATGGCATTGTATTTGCATATAACCTACACACACCTCCTCCTGAATACTTTAAATCATCTCCAAATTATGCCTGATACTTAATACAATGTAAATGCTATGTACATAGTTGTTATACTATATGTTTTAATTAATTTATTTATTTATTTTTTCTTTAGAGACAGTGTCTCGGTCTTTCACTCAGGCTGGAATGTAGTGGTGCCTTCATGGCTCGCTGCAGCCTTGAACTGGGTTCAAGTGTTCCTCCTGCCTCAGCCTCCTGAGGAACTATGCCTACAGGTGCAAACCACCATGCTTGGCTAATTTTTTTTTTTTTTTGTAGAGATGGAGTCTATGTTGCCCAGGCTGGTCTCCCACTCCTGGCTTCAAATGTTGGTTTCATGTCAGCCTCCCATAGTGCTCGGATTATAGGCAAGAGCCACTGCACTTTGTATTTTTTTTTATTATTGTATTTTTTATTGTTTTTTAAAAAATATTTTCAATCCATGGTTGGTTGAATCCCTGGATGTGAAATTTTCAGATATTAAGGTCTGACTGTAATCTGCCCTTTCCTGAGAGAGAAGCCTCTACTTTCAGATGTGAAAACTGTCTAGTTACTTAAATGTAACATTCTCTCACATTACATACCCCAGCCCAATCCAGTGTGTCTGTCTTCTATTATTTCCCGTAAACAG
Seq C2 exon
GTTATCAAGTCAGCAAACCAGATGCACTCTCCAAGTTGGAACGAGGAGAAGAACCATGGACAATGGAAGATGAAAGGCACAGTCGAATCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256087:ENST00000221315:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.588
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGACACTGGAGGATGTT
R:
CAGATTCGACTGTGCCTTTCA
Band lengths:
215-1111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains