BtaINT0165567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019844 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:HGNC:23154]
Coordinates
chr4:113425036-113429421:-
Coord C1 exon
chr4:113429308-113429421
Coord A exon
chr4:113426547-113429307
Coord C2 exon
chr4:113425036-113426546
Length
2761 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCTTGTTTTGTCCTTTCAGGGG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GGCGCGAGGCCCCCAGGCCGGAGAAAGGTGCCCGCACGGAACAAGCTGAAACTCCCTGCAGAGAAGACCAGGTGTGTGCACCACGCAAGCCTGAGCCCACGGGCTCCTGCCCAG
Seq A exon
GTGAGTCTTCCCAGCAGTCCATCCTACCAGGGGGCCAGGCGGAGGGAACAGGGGTGTGCAGGCATCGTGTAAAAAGAAAGCCACCCCAGGGCCTTCCAACCCAAGATGAATCAGGCCCTGCCACCTTTCTGCTGTAGAGCTTCAGCACCCAGCAGGAATTCTGCATCCACAGACAACAGGAATCAGAGAGGCTAGTCACCAAAGAGAAATACGCTCTCAACTTCCACGTCTTCCGGAAGTCTTACCTTTCCATTCTCTCTCCCCCAGTCGATGTTCACACTTGTTGACAGCTTGAATCATGATTCCCACGAAGACACGTGGTGTCAGTGTCGATCAACCTTTTCATTGTCATCCCCAGACCTGCTCCCTCCCCCAAATCTCCACTGACCTTGGTGCTACCCAGATGAACTGTTGTACTTGATGCATCTCCCCCATATCCACGGTGATCAAACAGTTGGTTCTCTCTCCATAACCCTACCCATCACTTCCTTCCATCACCACCAGCCTTATCACCTCTTGCCTGAGTGATGTCACCTATTCCACAAGGGCTTATTTGGTGCCCACTCGGGCTAAGCTGTTTTAGGTAGAGCAGAAAGAGATGGGCTGTAGAGTGATGTGGTCCTGGGTTCGAATCCCTGCTCCACGTGTTTATAGCTGAGTGATCTTGGATAGGCTACAGGAGCCTCAGTTTGTTCACAAGGAGGAAGGGTAACTTCTGCACAGGGGTTTGGGTGAAGGTTTGTGAGAGTGTACACACAGTGCCTCATCTCCAGTTGGCTCTCAGTACATGATGGCAATCCTCAAGCTGTCTGCCCTCCAGAGACTGAAATCTGACACCAATATGAGCTAGAAGAAAGAAAGAAAAGAACAAATAACGATAAAGCCACATCACAAGGAAGTGTAGAAGAGTCAACCGTGTTTATATGAGACCCTCATGTGTTGGATTTGTCAAAGCTTTTGTTGGTTTGTGCTCCATGTTGAGAGAGGTGTAGACTTCAACTTGGATGAGGCTGGAGGATGGGAAGACATCCTTGGCTGACTTAGAAGTAGGCAAGTTGACATATTAATAACTGGGGTTATAGGAGACCAGCTTGCCTGAAGTGAGGGGTTTATGCCTTGGAGTATTGAGAGAGTTGGACTGGGTTGGGGTGAGTCTCAGATGCAGCTAGAGCAGACTTTATACTCTAAATAATGGAGAGCTATTGATGGTTCTTTGGTAGCAAAGTTGCACAAAGAAAATGAAAGTGATAGCGCAGTATGATAAAGAGCTGTTTGAAATGGATGGATGGGTAAAAGAAACTGGAAGGAAATCTAATTGTGATAGTTCAAGCCCCATGCTATTTATTACAGACTTTTAGAGCCAGACAGGAAGTCCAATCAGCTGGTTCCAAGGCTCTGAAACCAGAATCACTTTGGGAGCTCGAAAGAAAGGAAACATTCATGGGCCTGGGTCCCCTAGATGCACTTAAAAGGTTCCCCAGGAGATTAGGACATGGCACAAGATTTAGGCACCATGAACCGGTCCATTGCTTACGCCTAAGCAAGCTAACAAACTCAACTCAAAGAAAACTCAATTCAAAGAGATTAAGTGACTCAACCGTGGTCACACTGCTGCTTAGTGGCAGAGAAAAACCCAAATGGACCCTCCCAGTCTGGGTCCTGAAATCCTTCCTCTTGGCTGGGTCATCTCAGTGCCCAAGAAGGGCAGAGCACCAGGGGAACCTGTATCAAACCTGCTTCCCCCAGAGGGCCTTCCCTGTGTCTCCAGAGGTTGGCACCATCCATTGGTTCCCCATGTCCTGTAAACTCAATCCTCTTCTTAAACCGGGATTTCCCACCTGGCCCTAGACATGAAGGGAGTAGGAGCAGGGGGAAAGCCTTTGAGAAACCACAGGGAGGAATGCAAAGGTCTCTGGTCAGTGGCAAGGAGTTAGAAGATCCCCTGGAGAAGGGAATGGCAACCCAGTCCAGTATTCTTGTCTGGAGAATCCCACAGACAGAGGGGCCTGGCGGGCTATACAGTCCCCTGGGTCGCAAAGAGTCGGACACAACTGAGCAAATATCACAGAAACAAGGTGAGTGTCAAGATCAGCCCACAGGAGGATGTGGAAGACCTTCTCCTGAGGGCAGTGGAGTAGATCCAGGAAGGTGGGGTGTTTGCTGATAAGCCTGCTGAGCTGCAGTGGATTCACAGGGCACAAAGGGGAGTTGCTCATCTGCAGATGGGAGACTGTGGTTCCAGAAAGGAGTGGGCTGGACAGCAAGATGGGGGTGGCCCCCCTTCGCATGGGCCTCTGACCCCTCAGAGTGAAAGCTGAAGACTGAACCCTGAGGGTAAGGGGTGCCCACCATAGCGGCAGGGTCTCCTTAAGGAGGCAGGCAAGCCAAGGGGAAAGCACCCCCTGGCTTGGAGAGCCTGGGAGGAGGACTTAGGGTGGTCCTCCGATTTGGACATTTCCAGGAACTTTCCAGTGGAAGGAGCAGGAGCTAGGCTTAGGGACTTCAGGAAGTGGTGGTCCTATTGGCAAACAAACAGATCAGGTGAAAGTCAGTCAGTCCATTCTTTGCGACGCCCATGAACTATACGGTCCATGGAATTCTCCAGGATAGAATACTGGAGTGGGTAGCCTTTCCCTTCTTCAGGGAATCTTCCCAACCCAGGAATTGAACCCAGGTGTCCTGCATTGAGGACGGGCGCATTCTTTACCAGCTGAGCCACAAACGTGGGGTTTAACAGACTCGCCTTGTTTTGTCCTTTCAG
Seq C2 exon
GGGACGAGTGGATGATTCGGAAGGTGAAGGTAGAGGAGGAGGAGGAGGATCGGGAGGCCCACAAGGAGGCGGAATGGCCCCAGCATCTGGCATTACGCCCCAGCCCCTTTCCCCCGCCTGACCTGGGGTCTCTGGCCGCCGCGTATAAGCTGGAGTCGGGGGCCCCAGGGACACTGGGTGGGCTCGCGCTGGCCGGGTGGGTCCCGACCGCCTCGGAGAAGCCCTACGGCTGCGGGGAGTGCGAGCGCCGGTTCCGGGACCAGCTGACCCTGCGGCTACACCAGCGGCTGCACCGCGGCGAGGGCCCGTGCGCCTGCCCCGACTGCGGCCGCAGCTTCACGCAGCGCGCGCACCTGCTGCTGCACCAACGCAGCCACCGCGGCGAGCGGCCCTTCCCCTGCTCCGAGTGCGACAAGCGCTTCAGCAAGAAGGCGCACCTGACCCGCCACCTGCGCACGCACACGGGCGAGCGGCCCTACCCGTGCGCCGAGTGCGGCAAGCGCTTCAGCCAGAAGATCCACCTGGGCTCGCACCAGAAGACGCACACGGGCGAGCGGCCCTTCCCCTGCCCCGAGTGCGAGAAGCGCTTTCGCAAAAAGACGCACCTGATCCGCCACCAGCGCATCCACACGGGCGAGAGGCCCTACCAGTGCGCGCAGTGCGCCCGCAGCTTCACGCACAAGCAGCACTTGGTGCGGCACCAGAGGGTGCACGCGGCGGCCGGCCGCACCCCGCCCTCTCCCGGCGCGCCGGCCTCGCCCACGTCCTCTGCCTCGTCCCCCACCGCCTCCCCTCCCGGACCCAAGCCTTTCTCCTGCTCCCACTGCGGCCTGAGCTTCGGCTGGAAGAAGAACCTCACCACGCACCAGCGCCTGCACAGCGGCGAGGAGCGCCCTTTCGGGTGCGACGAGTGCGCGCTGGGCGCCCCTGTAGACCCCGCGGCCCCCGAGCCCTTGGCCTGCGCGCCCCGAGGCACTCCGGCGCTCCCGGGCACTCCGGGCGGCGAGCGGTCCTTCCTCTGCCCCGAGTGCGGGCGCAGCTTCGCCCACGGGCAGCACCTGGCGCGACACCGGCGGGTGCACACGGGCGAGCGGCCCTTCGCCTGCGCTCAGTGTGGCCGCCGCTTTGGCTCGCGGCCCAACCTGGTGGCCCACTCCAGGGCCCACAGCGGCGCCAGGCCTTTCGCCTGCGCGCAGTGCGGCCGCCGCTTCAGCCGCAAGTCGCACCTGGGTCGCCACCAGGCGGTGCACACGGGCAGTCGGCCCCACGCCTGCGCCGTGTGCGCCCGCAGCTTCAGCTCCAAGACCAACCTGGTCCGCCACCAGGCGGTGCACACCGGCTCCCGCCCCTTCCCCTGCCCGCAGTGCGGCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGACATCAGCGCATCCATGGAGGAGCCGCCCACCCGGCCTCCGGATCTGACCTCTCGAGCCCAGCCTGGCCCACGTCCACCGACGTGACCGCACCCGCGCTCTTCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019844:ENSBTAT00000026440:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]