HsaINT0187343 @ hg19
Intron Retention
Gene
ENSG00000181444 | ZNF467
Description
zinc finger protein 467 [Source:HGNC Symbol;Acc:23154]
Coordinates
chr7:149461453-149466289:-
Coord C1 exon
chr7:149466179-149466289
Coord A exon
chr7:149463329-149466178
Coord C2 exon
chr7:149461453-149463328
Length
2850 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCTTGTTTTGACTTTCCAGGAG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GGCACGAGGCCCCTACACCGGAGGAAGGTGCCCACACAGAACAAGCCGAGGCTCCCTGCAGAGGCCAGGCGTGCTCAGCACAGAAGGCTCAGCCTGTGGGTACCTGCCCAG
Seq A exon
GTGAGTCTTCCCATCACTTCATCCCACCACGGGCTCAGGCCAAGGGAACGGGGCCCAGCAAGCTCCGGAGCTGCTATCTCATGAGGCAGGTAATCCCCCAAGACAGGCAGTCCAGGCCCTTCTAACCCAAGTTGAGTTCAGGCCCTGGCACCTTTCTGCTGTGGAGCTTCAATGCCGAAAGGGAATTTCACATCTGTAGATGGCAGGAGTCAGAGAGGCTGGTCACCAAAGAGAAACACAGCCTCCCCTCAAATGCCTTCTAGAAATCCTACCTCCCCCTCTTTATTTCTCCCAGTCTAAGTCTAATTACAGTTGCCATGAAGATACATGGCTTTGATCAACATTTTCACTGCCTCTCCCCTGACATGCCGCCTTCCCCAGCTTCCACTGATCGTGAGGGTACCCAGATGCTCCACATCTGCTGTATTCAACTCATCTCCTCATACCCAGGGTGATCAAACTGCTCACTCTCTCTCAACAATCCCACCATGACTTCCTTCCACTGCCACCATCCTTACTACCTTTTGCCTGAGGGATATCATTTATTCAGCAAGGATTTATTGAGTGCCGACTACATACAGGCTGTGTTAAGTACAGTGGAAAGAGATGAACTGTAGAGTTACCTGGACCTGGTTTGAATCTTTGTTCTGCATTTACTAGCTGAGTGCCCTTGGATAGGCCACCTTGCCTCCAGGAGCTTCGGTTTGTGAAGGTTTGTGACAGTGTGTGTACAACACTTCATCTACAGTTGGTCCTCGAGAAGTGGCAGCAGTCCCCATTTTTATCAGACACATAAAGACACCTTTCTTATTAGACACAAAAGAAATGGAACACAAAATGTCCATACCTCAGAAGAGAAAATCTGGTTGAGATGACCTTAATATGAGCTAGAACAAAGAATTAAAAGAACAGTATAAAGGCAAGTCACAAATAAGCACAAAAGTGTTAACAGTAAGTGCTATAGGAGTTTATGCCAAAAGATCCGCATGCACTGGGAATTTGTCAAAAAACATTAATTTGTGCTGCATTTTAAGAAAGGTGTAGACTTCAGTTCTGAAAGGGGTGGGGTGGAGGATGGGAAGACGTTCTAGGCTGAGAAGATCTTGAAGCAGGAAAGGGGAGGAGAGCAGCTTGGCTGAAGTGGAAGGTCCATGCCTGGGAGAAAGAAAGTTGGACTAGGGTGGGGTGAGCCTCAGATGCAGCTAGAACCTGTTTTATCTTCAAATAATAGGGTGCTGGGCTGGGCACTGTGGCTCATGCCTGTAATCCCAGCGACTCAGGAAGCTGGGGTGGGAGAACTGCTTGAGGCCAGGATTTCAAGACCAGCCTGGGCAACACAGCGAGACCCCATCTCTGAAAAAGTAAGAAATATTAGCTGGGCATGTTGGTGCACACCCATAGTCACAGCTGCTTGGGAGGCTGAGGTAAGAGGATCACTTGGGCCCAGGTGTTTGAGGCTGCAATGAGTCATTATCGTCCCATTGCACTCCAGCCTGGGAGACAGAGCAAGACCCTGACTCAATTAAAAATAAATAAATAGGAGCTATTGATGGTTCTTGAGTAGAAAAGTAAAGAGTGCCACAATGAAGGTGAAAGCAGTATCACAGTGTGATAAGTAGACAGGGGTCTGGAATCAATGGACTGATAGAAGAAACTGGGAGTACCTCTGATTGTGGAAGTCCACGTGTGATGGAATCAAGGCTCAGGCCAGACAGGAACCCAAATTATCTGCTTAAATGATTCACAAATGAGAATCACTTTGGGAGCTTTAAAGATGAGAACACGTTCGTGGGCCTTGCCCCCATTTGTGCATTTTCTCAACGTTTCCCAGGAGCTGATGATGCAGCACAGGCGTGGGAGCTTTAAACTAGTCCAACTCTTACACAAAGGGCAAATTTTCTTAGCGGACTAAGAAATGTAACTCAAAGAGGTTAAGTGACTGAACCAAAGTCACACTCCTAGTTAGTGACAGAGGAGAACCTAAGTTGGACCCTCCCGTCTGGACCCCGGGCTCCTTCCTCTAGGCTGGACCATTGCAGCACCCGACAGGGGCAACACTCCAGCGGAATCCCCTGCAACCTGCCCTTAGGCTGAGGCTTCCCTAGAGGGCCTTCCCTGTTTCTCCAGAGCCAGTGTTCACTAGTTCCCCAGACCCTGTAAACTCCATCGTGGTCTTCCTAAATGGGACTTCTCCTCAGGCTGTCCAGCAGGAAAGAAGGGAGTAGCAGGAATACGTGGGTACCCTGGTTCCGTGGCCACTAGAGGTAAGGTGGGCTGGGGGTAGGGGTTAGAGAGCAAGAGAAGCAGCCCAGGTGAGATGTCAAAGATCAAGTTTTCAAGGCCACCAGGGAAGGAGGCTCTAGTCCTAAGGTTAAAGTCAGCCAGGGCTCAGTTTGGGAAGCTCAGGTGTGTGGTGAGAAAGCTGCTGAGCTGCGGCCAGTTTGCAGTACCAAGGAGAGCTGCTGGACCAGAGATGGAGACTGAGGTCCCAGAAAGGCACTGCTGGAGCAGGAAGATCTGGGCCAGCCACCAAAGGGATGTGAACCTGGAGCGAAGCAGGAGGACTGAAACTTGGGCAACCTTCCTCTTCAGGGGTGCTGGAGGGCTCCTGGGCACATCCAGGCCGGGGAAGAAGCCCCCGGGAGCCGTGTGGTGTTCACACGCATCACAGGTTCAGGAGAATGCAGGAGGGGGCCTGAGAAGAGCTGCGGATTTGGTCACTCCCGGGAAGCGTTAGGTAGAGTGGAGAGCAGAGCCAGACCGCGGGGCTCCAGGAAGTGGAGATCCTGTGGTTAAATAGACGTTGCCGCACGTGGAGCTCAATAGACAATTCTTGTTTTGACTTTCCAG
Seq C2 exon
GAGAGGAGTGGATGATTCGGAAGGTGAAGGTGGAGGACGAAGATCAGGAGGCAGAAGAGGAGGTCGAATGGCCCCAGCATCTATCGTTACTTCCCAGCCCCTTTCCCGCGCCTGACCTGGGGCATCTGGCTGCCGCGTACAAACTGGAGCCAGGGGCCCCGGGGGCACTGAGTGGGCTCGCGCTGTCTGGGTGGGGTCCGATGCCGGAGAAGCCCTACGGCTGCGGGGAGTGTGAGCGGCGCTTCCGGGACCAGCTGACGTTGCGACTGCACCAGCGGCTGCACCGGGGCGAGGGCCCCTGCGCCTGCCCGGACTGCGGCCGCAGCTTCACGCAGCGCGCCCACATGCTACTGCATCAGCGCAGCCACCGCGGCGAGCGGCCTTTCCCGTGCTCCGAGTGCGACAAGCGCTTCAGCAAGAAGGCCCATCTGACCCGCCACCTGCGCACGCACACGGGCGAGCGGCCCTACCCGTGCGCGGAGTGCGGCAAGCGCTTCAGCCAGAAGATCCACCTGGGCTCGCACCAAAAGACCCACACCGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGCTTTCGCAAGAAGACGCACTTGATTCGGCACCAGCGCATCCATACGGGCGAGAGGCCCTACCAGTGCGCACAGTGCGCACGCAGCTTCACGCACAAGCAGCACTTGGTGCGGCACCAAAGGGTGCACCAGACGGCCGGCCCGGCCAGGCCCTCTCCCGACTCGTCCGCTTCTCCTCATTCCACTGCCCCGTCCCCGACCCCATCCTTTCCCGGGCCAAAGCCTTTCGCGTGCTCCGACTGCGGCTTGAGCTTCGGCTGGAAAAAGAACCTCGCCACGCACCAGTGTCTGCACCGCAGCGAGGGTCGCCCCTTTGGGTGCGATGAGTGCGCACTGGGCGCCACCGTGGATGCCCCCGCCGCCAAGCCCCTGGCCAGCGCGCCTGGCGGACCGGGCTGCGGCCCAGGATCCGATCCCGTGGTGCCCCAGCGCGCCCCCTCGGGCGAGCGGTCCTTCTTCTGCCCGGACTGCGGGCGCGGCTTCTCCCATGGGCAGCACCTGGCGCGGCACCCGCGCGTGCACACGGGCGAACGGCCCTTCGCCTGCACGCAGTGTGACCGCCGCTTCGGCTCGCGGCCTAATCTGGTCGCCCACTCCAGGGCCCACAGCGGCGCCAGGCCTTTCGCCTGCGCTCAGTGCGGCCGCCGCTTCAGCCGCAAGTCGCACCTGGGCCGCCACCAGGCGGTGCACACTGGCAGCCGCCCCCACGCCTGCGCCGTCTGCGCCCGCAGCTTCAGCTCCAAAACCAACCTAGTCCGCCACCAGGCGATCCACACAGGCTCCCGCCCCTTCTCCTGCCCGCAGTGCGGAAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAGCTCATTCACGGCGAAGCCGCCCACGCGGCCCCGGACGCCGCCCTTGCGGCCCCAGCCTGGTCCGCTCCCCCCGAGGTGGCGCCGCCCCCGCTCTTCTTCTGAGCCTAGTTCTCACGAGGACCCTTTCTTGCCCACAGTTTCGAGAGGCCCGTGCCATGAGACCGCCTGGGGTGAGCAAGGCGACCTGGGCTGCTGCCCGAAGGTTTGGCCGCCGCGGGACACCTGTTTCCTTCCCGCAGTGTCTGCGTCCGCACAGCATACCCAGCTCGGACCTCCTAGGACAGAGACTCAGCGAACCCTTGCTGGGAACCGCTGAGCTGAAGTTCTTGGAAGGCTCCCACCCAGGTGCCCCGTTGGAAAGCAGATATTTCCCGGACCCAGCGCGGCCTCAACCAGGGCAGGAAAGAGTGGTTATTTATGTACTTAAAGTTTCATTAAAGTTAAAATCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181444-ZNF467:NM_207336:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)