MmuINT0179321 @ mm9
Intron Retention
Gene
ENSMUSG00000068551 | Zfp467
Description
zinc finger protein 467 [Source:MGI Symbol;Acc:MGI:1916160]
Coordinates
chr6:48386612-48392059:-
Coord C1 exon
chr6:48391946-48392059
Coord A exon
chr6:48389454-48391945
Coord C2 exon
chr6:48386612-48389453
Length
2492 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCCCCCTTGTGACTGCTCAGGGG
3' ss Score
6.55
Exon sequences
Seq C1 exon
GGCATGAGACTCCTGGCCAGAAAGAAGGCATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCAGTACCCCACAGAAGGCCGAACCTGCAGGCTCTGTCCCAG
Seq A exon
GTGAGTCTTCCTGATGCTCTGAGGATCAGGCTAAAGGACCAGGGACCAAACTAATTCCACGGCTTCTCTCTGAGGAGATAGCTGTGTTTCAGGCCCTCTCCCTTTTCCTCTGTAGTACTTCAGCGCTCACAAGGAGTTTCACATCTGTGGACAGTGGAATGGGAGAAGCAGGTACCAGAAGTGCATCTCCCTTCTGGAAGTCCCAACTCCCCTCATCATCCCCTCTCCCCCATTCATGTACGCTGTTGTTCTCTTGGATTATAATTGCCACAAAGATACAGGGTATTCATCAGTATGTTTGCTGCCGCTACCCTGCGTGCCCCTTTCCCCAAATCTTGCTGATCTTCATGATACCAAGGGCCCCCAATCTGTAGCACACACGTGTGTGCAAACATACACACAGAGACACACACACTTCTTCCATTCATCACCACTTGCTTGAATAGCATCACTGACTCAAGAAAGGTTTATTGAGTGCACACTGCACAGAGGTGTTGAGTATGGCAGGGAAAGACAGGGCACCTAGCTGCACAGCCCTTGCTCTGCACTAACCTGCTGAACGTTCTGGGGCGGGATGCTGTGTTCCCTCCAGGGGTCTTTTGTTCACCTGTCTTCAGGGTGACAGTAACATCATGGCTAGTGTGAAGCTTTGTGATGCTACATGCACACTGCCTAATCCCTAGTTGGCCTCAAACAAATGGCCATAGAGCTGATTTTAGAATTCAAGATGTCTGCCATCCAGAAGTTAAACCAGAGTTGGGCTGCTGTTACTATGAGGCAGGGCAAATAATTAAACCAACAATACATAGCCACAGGTTCATGGAAGCTAATATTAATGGTAATTGCTATAGGGGTTTATGGTAAAGGATCTTTATGTGCTAGGCATGTCAAAATGTTGCTTGGTGTGCTGCAATGTGAGAGGAACATGGATTTCAGCTGCTGTAAGTGGGGTGGAGGAGGGGACATTGTTGGCTGAGAAAGGACTTCCAGGCAGGAAGCAGGAAAGGTGATCTGTGACAGGTTGGGGAGCAGCAGAGTGAAGGACAAAGCTTCACACCTGCACGAAAAGGGGGGCCCCCTCGTGAAACCAGAAGCTGTTGCTGATTCTTGAGTAGAGGAGTGGCATGTAGAGGAGGGAAGTGACATCACGTCAGAGGCCAAGCAGACAGTGATATGGACCCAGTCGGTTAGAAACTGGGAGTGAATGTAATCTGTGTAATATGATCAAGGCTCAGGCTGTGACAGGCTTTCAGGGCCAGGCAGCGCTCAGATCTGTGGCTCAAATGTTCCCAGACAAGATTCACTGGGGGTGGGGGTGGGAGTGGGTGGGGTGGGGGAGGGGGAGGAGGGCTGTAAAGGAGGAGAACAGATTCCTCTGCATGCATGGATGCATTTTGTGAGGATTCCTTCGGAACTTGAATCTGCCCTTGGGCCGAGGCTCCCCGTGAGGCCTCACCCTGCTTCTCTCAGTGGCTGAACACTCGCCAGTCCCCCTGCCCCCGCCTGTAAACCCCAGTCTTGTCTTCTCTCCTGTAACTCTTCCTTCGATCCTGACAACTCCAGCTTCCTTCTTTCCCGGGGAGGTGGTGGTGGTCGGGGTCTCTGTGTCGCCTTGGCTGTCCTGGAACTTGTTCTGTAGACAAGGCTGGCCCAGAACTCAGATCCACCTGCTTCTGCCTCCCAAGTGCAGCTTCTCTCCCTCTCTCTCTCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCTCTCTTTCTTTCTAGACAAGGTTTCACTGTGTAGCCTTGGCTGTCCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCTCGCCCTGCTTGCTTCTTTCTTAATGGGACTTCCCAGTCCTGTAGAGCAGGTGGAAGGGAGCTGAATAGTGATTCCAAAGGGATGGAGCAGTAGAGGGAGCATTTGAGAAGGCAGGACAGAGCACAGGGGTGCCCTGGCATTTAGGGAGGGAGCAGAGGGAGAGGCACCAAGGTTTCAAGGCCATCCTGCCTCCTATGGTTAAAGTTGGCTGGGAATAGGTCTGCAAAGGCCAGACATTTGTTGACACTATAGCCAGTTTGAAGGACACCCACCCAAGAAGGGCCAAGATGATAGCAGGCATCTTCCACAGGGAAGGAAGGTCAGAAGTATGCAGCAGCCCTGTTCTGGAGGGAGCAGGGGGAAGGGTGACTACTAAGGAGTCAAGGGAGGATTCCTGGGAGGGGTTGGGGGGGGAGGAGCTGGCCAGCCTGGGAGAAAAGCCCCCAGGGAGGCCAAGCTGGCCAGCAGCTTTGGCTGCATAGGGAACAGAAAGGATGAAAGGACTTTGGGGTTTACTGATTCCCAGGAAGCTTTGAATGGAGAAGTGAGTCTACTGGCAAATGGATGTACCCATGGATGGGCTTTCACACAATTCCTTTTTTTCCCCCTTGTGACTGCTCAG
Seq C2 exon
GGGAGGAATGGATGATTCGGAAGGTGAAGGTAGAGGATGAGGATCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCCACTCCTGACTTGGGTCAGTTGGCTGTTACGTACAAACTGGAGCCAGGGACTCCGGGAGCACTAGGTGGAATCGCGCTGTCCGGGTGGGCCCCGATCCCTGAGAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGTTTCCGGGATCAGCTAACTCTGCGGCTCCACCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTCCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGACAAGCGCTTCAGCAAGAAGGCCCACCTGACCCGCCACCTGCGCACGCACACTGGCGAGCGTCCCTACCCGTGCGCTGAGTGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCATCAGAAGACCCACACCGGAGAGCGGCCCTTCCCCTGCACCGAATGCGAGAAACGTTTCCGCAAGAAGACGCATCTGATCCGCCACCAGCGTATCCACACCGGCGAGAGGCCCTACCAGTGCACCCAGTGCACGCGCAGCTTCACACACAAGCAACACCTGGTGCGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACCCGGTCCTCTCCAGACATTCCTGTTGCTCCCCATTCCCCCACCGCGTCTCTTACCCCGTCCCCTCCTGGGCCCAAGCCTTTCGCTTGTTCCCACTGCGGGCAGAGCTTCGGCTGGAAAAAGAACCTCGCTACGCACCAGAGTCTGCATCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCAACGTGGACCCCGCCGCCGAGCCCTCGGCCTGCACTCCCCATGCGCCTGACTGTGGACCGGGTTCGGGGCCCGCGGCACCCCAGCGCACCACCTCCAGCGAGCGCTCCTTCTTCTGCCCGGACTGCGGGCGAGGCTTTGCCCACGGGCAGCACCTGGCCCGCCACCGGCGGGTGCACACGGGCGAAAGGCCATTTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGCCCATAGCGGCGCCAGACCTTTTGCCTGTGCGCAATGTGGCCGCCGCTTCAGTCGCAAATCTCACCTGGGCCGCCACCAGGCAGTGCACACTGGTAGTCGCCCCCACGCCTGCGCCGTCTGCGCCCGCTGCTTCAGCTCTAAAACCAACCTGGTCCGCCATCAGGCAATCCATACAGGTTCCCGCCCCTTTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCATCTGGTGCGGCACCAACGCATCCATGGGGACGCGGCCCTCCCAGCCCCAGCCTCGAACCTCTCTGCTCCAGCCTGGTCCAATCCCTCCGAGGTGGTACCACCTCCAATCTTTTTCTAAGCGAAGTTCTGACCCTCATCCTGCCTTTCCTGACAGATTTGGGAGACTCATATCTGGAGACTTAGTGGGTTTTCAACATTCACACCTAAGTTGCTGCCAAAGCACCAGGACACTTGGGCCATTTCTTTAATTGTCCTTTCTTTAATGTTAGTTGAGAAGTCCAGAAAAACTTAGCTCTTGACAGTTGTGACAACACACAGAGACTATCCTTGCAGATACCACGCTGAGAAACAGACATTTATGGGGATCAGCCAGGTCAAGGGGAGATTGACTGAGCAAGAGACCTCTAAATAGAGGATAAGAATAGTTATTTATGTACTTGAAGTTCATTAAAGTTCAGATCTGAGGTTCTGGAGCTGTTAACTGAGCCACTGAAGGAAAACCTGACTCTTTATTCGCTGCCACTTCCATCCACAGGAAAAAGACCTTTTCTGTCAGTCCAGGGACGTAAACTTAGCTAGGTGGTTTTTCCCAACAAAGTGCAAGATGCACACAGGCCAAACAACTACCATGGTCCCGCAAGTGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGAAATTTGGCTCAGAGGGAGTAGGTGAGGACCAGAGGGGACAGGCTGCTCTTGGGCGCTCCCAGGGGACCAGCACTGTTACTCTAGGTGCTGCTGCGGCTCCATACCACCTGTTTCCAGGCCTTCAAGAGGCTTCCCAGAAGCATCCTTACCTATCTCTGCCTAGGAGGTACAGAAGGAGGCAGTGCGTGAACAGGCCATAAAGGTTGTTTGTGTATCACTTTTCCCACCAGTTGTCTCCTTTTGAGGACTGCTTGAGCCTGCAGGCACTGCAACTGTACACCCCGCTGTGACTGAAGCACAGGGGCTGGGCTGCCTGACAGTGAAGGAGCAGTCAGGGCATGGGGTGTGAGTTTAGAGAGAACTATTTTGGGTTCAACCTCACAGAGGACTTGGAGGGAATCCTTTACTCTCCCGGAACTTCAATTTCTCATTAAAATGAGAGCTGGTGTTGATGAAAGCTGAGAGTACTTTCTATCCTATTGTTAGATTACTAACAACAAAAATACCCAAGGCAATGGTCTCCTGGGTGCTAAGCACTGGGAAGGATCAGGAGCCATCACAGCTTAAGTAGGTTTCCTGGTTTGTGTTACTGTTGCTGGGATAAAATACTGACCTTGGCTTTCCAAGGGTGGCTTTCACGTCTACATTGATGCCCCTGGAGTGATAGTCAACGTTTTCTTTGCTGTTCATTGTTGAACCAATAAAGTCTGTGAACCCTAAAGAAAAAAATACTGACCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068551-Zfp467:NM_001085415:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF153441=FAM217=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF032269=Yippee-Mis18=WD(100=16.5),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: