GgaINT0096011 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:301750-302280:-
Coord C1 exon
chr2:302167-302280
Coord A exon
chr2:301905-302166
Coord C2 exon
chr2:301750-301904
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TGAATCTTTTTGACATCTAGTTG
3' ss Score
5.02
Exon sequences
Seq C1 exon
GCTACAGATTTTTCAAGCCCGGTGGCTTGTTCGGTATTAAACAGTCGGAGGAGCCGTTCCCTGAAGGCCAGCAGATGCAGGAGGACAGCAAGATCCTCGTGAGCCCCTGTGCAG
Seq A exon
GTAGGTGTTGCATGTGTCCTCATTGGGGTTGCTGGAAATTGGCCTTGGCAGGGGATGATGGTCTTGTTGGAGAGCTGCTTGTAGCCATTTGAGGCCAGTTAATGGGATTTTTTTGCCATTACTGCTGTCTGCCAGCACTGCACTCACCAAGCCATGGGGGAATAGGGCTCTGGAAAGGGTCCTAAACCGCCTGGTTAATTAGGGTGCTTTAAACTGAGCGAAAGACACTGACATTAACGCCCTGAATCTTTTTGACATCTAG
Seq C2 exon
TTGAGCCTGTCCGAGCAAACAAGGTGGAGCAGCCTGATGAGAAGCCCGGGGTTGCTGCAGGCTCTCTGGAGCTGTACCCCACTGGTGCCAGCAGCTCCGGCCGCTGGTTCCATGGCGGGCAGCGCGCACCTGAGCGGGCAGGCACGGAGCGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019714:ENSGALT00000031316:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.885
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGATTTTTCAAGCCCGG
R:
CTGCCCGCCATGGAACCA
Band lengths:
236-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]