RnoINT0168266 @ rn6
Intron Retention
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78069978-78073876:-
Coord C1 exon
chr4:78073763-78073876
Coord A exon
chr4:78071501-78073762
Coord C2 exon
chr4:78069978-78071500
Length
2262 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCCTTTTGACTGCTCAGGGG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
Seq A exon
GTGAGTCTTCTTGATGCTCCAGGAGGATCAGGCAAAGGGAACAGGGACCAAGCAAATTCCAGGGCTTCTCTCTGAGGAGAGAGCTGTGCTGCAGGCCCTCTCCCTTTTCCTCTGTAGTACTTCAGAGCTCCAAAGGAGTTTCACATCTGTGGGCAGTGGAATGGGAGAGGAAGTTACCAGAGAAGTGCGGCTCACTTTTGGAAGTCCCAGCTTCCCCCATCATCCCCTCTCACCCCATTCATACATGCTGTTGTTCTCTTGGATTATAATTGCCACAACGATACAGGGTGTTCATCAGTGCGTTCACTGCCTCTACCCTGCATGCTCCTTTTCCCAAATCTCTGCTGATCTTCAGGATACCAAGGGCCCCCAGTCTGTAGCGCACACACATGCACCTGCACACATATGTGTGCGCAAACACAAACACATACTTTTTCCATTCATCACCACTTGCTTGAATGGCATCACTAATTCAGCAAGGGTTTAGTGTATACTGCACAGAGGTGCTGAGTGTGGCAGGGAAAAACACAGACCTGGGTTGAACCCTTGTTCTGCACTGACCTACTGAATGTTCTTGGGGTGGAATGCTGTGTTCACTCCAGGGGTGGTTTGTTTACCTGTCATCAGGGTGATAGTAGCATCATGGTTAATGTGAAGCTTCGTGATGCTACATGCACACTGTCTAATCCCTAGTTGGCCTCAAATAAATGGTCATAGAACTGATTTTAGAATTCAAGATGTCTCCCATCCAGAAGCTAAGTCAGAGCTAGGCTGCTGTTGCTATGAGGCAGGACAAATAATTAAACCAGTAATACATAGTCACAAGTTCACAGAATATCAATGGTGATTGCTATAGGAGTTTATGGTAAAGGATCTTTATGTGCTAGACATGTCAAAATGTTGTTTGGTGTACTGCCTTGTGAGAGAAACATGGATTTCAGCTGTTGTAAGTGGGGTGGAGGAGGGGAAGGTGTTCTTGGCGGAGAAAGGACTTCCAGGCAGGAAGCAGAAAAGGTGATATGTGACAGATTGAAGAGCAGCAGAGTGAAGGACAAAGCTTCACACCTGGATGAAGAGGAGGCTGGACTAGGAATGTGGGGGGCTGTGAGAAACCAGAAGCTATTGCTGATTCTTGAGCAGAGGTGTGGCGTGCAGAAGGGGGAAGTGACATCAGAAGCTGAGCAGACAGTGATATGGAACCAGTGAGTTAGAAACTGGGAGTGAATGTAATCTGTGTAATATGATCAACGCCCGGGCTATGACTGGCTTTCAGGGCCAGGCAGCACTCAGACACGATTCACTGGGGATGGGGGGGTGGGGGGGGAGACGGCTTTAAAGGAAGAGAACAGATCCTTCTGCATGCATGGATGCATTTTGTGGGGATTCCCTGGGGGATTGAATCTGCCCCTGGGTTAAAGCTTCACCTTACTTCTTCCAGTGGCTGAACACTCAGCAGTCTCCCTGCCCCCAGCCTATAAACTCCAGTCTTGCTCTCTCTCCCTTAACTCTTTCTTTGTAAATCCTGTCAACTCCAGCTTCTTTCTTTTGGGGGATGGGGGGGGGGAGGTGTCTCTGTATAGCCTTAGCTGTCCTGGAACTTGTTCTGTAGACAAGGCTGGCCTTGAACTCACAGATCCACCCGCCTCTGCCTTCCAGGTGCAGCTTCTTAATGGGACTTCCGGGTCCTGTAGAGCGGGAAGAAGGGAGCTGAATAGTGGTTCCAAAGGGGAAGGAGCAGTAGAGGAAGGCAGGATGGAGCACAGGGGGTTCCCTGGTGCTTAGGAAGGAAACAAGGGGAGAGGCACCAGAGTTCCAAGGCTATCCTGCCTCCTATGAAGGCCAGGCGTTTGTTGACACTATAGCCAGTTTGAAGGACACCCAAAAAGGGCCAAGATGGTAGTGGGCATCCTCCATAAGGATGGAAGCTCGGAAGTAGGCTGCAGTTCTGTTCTGCAGGGAACAGGGGAAGGGTGCCTACTAAGGATTCAAGGGAGGGTTCCTGGGAGGAGGGGCTGGCCAGCCTGGGAGAAAATCCCTAGGGGGGACGTGCTTACCTGCAGCTTTAGCTGCAGAGGTAACAGAAAGAGGATGGAAGAACTTTGGGGCTTACTGACTCATTCCCAGGAAGCTTTGAGTAGAGTACAAAAAGGAGCCAGACTGCCAGTGAGGAGCCTACTGGCAAATAGATGTGCCCATTTGAGGATGGGCTTTCACACAATTCCTTTTTTTTTTTTTTTTTTTTTTTCCCTTTTGACTGCTCAG
Seq C2 exon
GGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAGGTTGCACCGGGGTGAGGGTCCTTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTTCTGCACCAACGCAGCCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAGACCCACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGCACCTGATCCGCCACCAGCGTATCCACACAGGTGAGAGGCCCTACCAGTGCACCCAGTGTACACGCAGCTTCACCCACAAGCAACATCTGGTGAGGCACCAGAGGGTGCACGATGCTGCTAGCCGCACCCGGTCCTCTCCCGACATTCCTGCTACTCCCCATCCCCCGACCGCGTCTCTTGCCCCATCCCCTACTGGGCCCAAGCCTTTCGCCTGCTCCCATTGCGGGCAGAGCTTTGGCTGGAAAAAGAACCTCGCTACGCATCAGAGTCTGCACCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCAACGTGGACCCCGCTGCCGAGCCCTCCGCCTGCACTCCCCATGCGCCTGACTGTGGCCCGGGTTCGGGGCCCGTGGCACCCCAGCGCACGACCTCTAGCGAGCGCTCCTTCTTCTGCCCCGACTGCGGGCGCGGCTTCGCCCACGGGCAGCACCTGGCCCGGCACCGGCGCGTGCACACGGGTGAAAGGCCATTTGCCTGTGCTCAGTGTGGCCGCCGCTTCGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGCTCACAGCGGCGCCAGACCTTTTGCCTGTGCACAGTGTGGCCGCCGCTTCAGTCGGAAATCTCACCTGGGCCGCCACCAGGCAGTGCACACTGGCAGCCGCCCCCACGCTTGCGCCGTCTGCGCCCGCTGCTTCAGCTCCAAAACCAACCTGGTCCGCCACCAGGCGATCCATACGGGCTCCCGTCCCTTTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCACCTGGTGCGGCACCAACGCATCCATGGAGAAGCGGCCCTCCCAGCCTCAGCCTCAAACCTCTCTGCTCCAGCCTGGTCCAATCCCTCCGAGGTGGTACCGCCTCCAATCTTCTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707:ENSRNOT00000010377:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF032269=Yippee-Mis18=WD(100=16.5),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]