BtaINT0165643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019518 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr11:72273637-72274277:+
Coord C1 exon
chr11:72273637-72273873
Coord A exon
chr11:72273874-72274115
Coord C2 exon
chr11:72274116-72274277
Length
242 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
AAGCTCCCTCCCCTCTTCAGTGG
3' ss Score
6.31
Exon sequences
Seq C1 exon
CGGCGGCGGCGGCGGGAGCGGCCTGAGCTGGGCGCCGGGGCCAGGGCCGGGGGCTGCCCGGGGCCCGCGCCGTTGTATGGGGGCTGACTGCGGGCCCTGAGAGGAAGGGCGGGCGGGCCGAATTTAGAGGGCGGGGCCGGGCGGCCGCAGGCCGGAGGCGCGTCGGGCTGGAGCCGGTCACGATGCCCCGAAGGAAGCAAAGCCACCCGCAGCCCGTGAAATGCGAGGGGGTCAAAG
Seq A exon
GTCAGGGGTCAGGGGCCGTGAGGTGGGGAAGAGCGGGGGTGGGGTCAGTGGCGAGGGTTTAGGTCTGGGTGGAGGGCGACTCCTGAGGGATGGGGTGGGCGATCTGGACTCCTAGCTTCCCATCAAGGTACCCTAGAGGGTCTGCGAGTGCGGGAAGCACGGTCTGTGAGGGTTGTCTGCCCGGGTGCGGATGATGGGCTCGGTTCCTGAGGGAGAATCTACAAGCTCCCTCCCCTCTTCAG
Seq C2 exon
TGGATACCGAAGACTCCCTCGACGAAGGACCCGGGGCCCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGGTGACCGCAACAGCGACCAGCTCATGGGCTTCGAGAGAGACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019518:ENSBTAT00000025999:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTATGGGGGCTGACTGC
R:
CTGTTGCGGTCACCTTCCTC
Band lengths:
293-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development