RnoINT0168333 @ rn6
Intron Retention
Gene
ENSRNOG00000005298 | Zfp513
Description
zinc finger protein 513 [Source:RGD Symbol;Acc:1310456]
Coordinates
chr6:26537707-26538375:+
Coord C1 exon
chr6:26537707-26537971
Coord A exon
chr6:26537972-26538219
Coord C2 exon
chr6:26538220-26538375
Length
248 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
AAGCACCCTCCCCTCTTTAGTGG
3' ss Score
4.99
Exon sequences
Seq C1 exon
GTAGGGGGCTCCATGAATGGAAGCGGCGGCGGCGGCGGGAGCGACCTGAGCTGGGCTCTGGGGCCAGGGCCAGGGGCTGCCCAGGGCCCGCACCGGTGTATGGGGGCGGCTCGTGGACCCTAAGAGCAAGGACCGACGGCTGGGCCGATCTGGGAGGGGCGGGGCCGGGCGGCCTCGGGCCGGAGGCGCGTCGGGCTGGAGCCGGTCACGATGCCCCGAAGGAAGCAAAGCCATCCACAGCCCGTGAAATGCGAGGGGGTCAAAG
Seq A exon
GTCAGGGGTCAGGGGCCTTGAGCGGGGAGGAACTGGGGTGGGGTCAGTAGAGTGGGCTCAGGTCAGGGTGAAGGGGTACTCCTGAGGGTTAGGGGCGGATGATCTGGGATCTTAGCTCCCTACCAAAGTATTAAAGGAACCTGAGGGTCATCGAGTACGGGAAGTGCAGTTCACAACAGCTGGCTCCCTGGTTCGAATTATGGGAACGGCTTGTGAGGGAGATTCCACAAGCACCCTCCCCTCTTTAG
Seq C2 exon
TGGATACTGAAGATTCCTTCGACGAAGGACCTGGGGCTCTGGTGTTGGAGAGTGATTTGCTACTAGGCCAAGATCTGGAGTTCGAAGAGGAAGAGGAAGAGGAGGAAGGTGACGGCCACAACGACCAGCTCATGGGCTTTGAGAGAGACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005298:ENSRNOT00000050102:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCCTAAGAGCAAGGACC
R:
CTCTCAAAGCCCATGAGCTGG
Band lengths:
297-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]