HsaINT0187485 @ hg38
Intron Retention
Gene
ENSG00000163795 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr2:27380093-27380725:-
Coord C1 exon
chr2:27380472-27380725
Coord A exon
chr2:27380249-27380471
Coord C2 exon
chr2:27380093-27380248
Length
223 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
AAGCCCCCTCCCCTCTTCAGTGG
3' ss Score
6.13
Exon sequences
Seq C1 exon
CATGAATGGAAGCGGCGGCGGCGGCGGGAGCGGCCTGAGCTGGGCGCCGGGGCCAGGGCCGGGGGCTGCCCAGGGCCCGCGCCGCTGCATGGGGGCGGCCCGCGGGCCCTGAGAGGAAGGGCAGACAGGCGGGCCGAGATAGGAGGGGCGGGGTCGGGCGGCCGCAGGCCGGAGGCGCGTCGGGCTGGAGCCGGTCACGATGCCCCGAAGGAAGCAAAGCCACCCGCAGCCCGTGAAATGCGAGGGGGTCAAAG
Seq A exon
GTCAGGGGTCAGGGGCCTTGAGGGGAGAGGAGCGGGGGTGGGGTCAGTGGAGTGGGCTCAGGTCAGGGTGGAGGGGGACTCCTGAGGGATGAAGTGGGCGATCCAGACTCCTAGCTTCCCACCGAGGCACTAAGGGAATCAGAGTGGGTCAGCGAGTACGGGAAGTGTGGTCCACGAGGGCTGGTTCCTGAGGGAGAATCCACAAGCCCCCTCCCCTCTTCAG
Seq C2 exon
TGGATACTGAAGACTCCCTCGACGAAGGACCCGGGGCCCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAGGAGGAAGAGGAAGAGGAGGAAGGCGACGGCAACAGTGACCAGCTCATGGGCTTCGAGAGAGACTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163795:ENST00000323703:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGAAGGGCAGACAGG
R:
TCTCTCTCGAAGCCCATGAGC
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains