BtaINT0165881 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009242 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr11:13157612-13158589:-
Coord C1 exon
chr11:13158500-13158589
Coord A exon
chr11:13157731-13158499
Coord C2 exon
chr11:13157612-13157730
Length
769 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TCTCTTTCTGAATTTTCAAGATT
3' ss Score
7.09
Exon sequences
Seq C1 exon
AATCTGGATTAGAGGATTCAGAACCAGAACAGAAACGCAAGAAGATTGAGGACTCTTCAGGGAGATCAGTGGCACCTGATGTCCCTGAAG
Seq A exon
GTAAAGTAAAAATGATATTTTTCCTTATCCACGTGAAATAAAGATTCAGTATCATAATAAGTATTCTGTTGTTTAGGTAAGTAATGTGGTGAACTTGCTTAGATAATTAGAGTGGAAATTAACAAGTTTTGCGCACTGGCATTTCTGTGTTTTTACCTGGCAAAGATATTTTTATTGCACTCTTGAAGTCTGGGATAGGTACTCTCTTTGTTGCTCTGGTAAAATTGAGTTATACTTTCCCAGACAGAAATTACAGTTGAGTATTAGGACATGCTAGAAAAGCTTAGCTAGCAAACTTTGTTCATGGCCAGCTCAGATGAGCTGGGGGGCATCTGAGCCAGGGCTGAGCCGGCCAGCTCAGATGATCCGGGGGCATCTGAATGTGTTAGGCATTACCTGATATATTCCTCAAGCAGACAGTTGCCTGTCATTTTGCCTCTTCATACCATTATACCATTTCTTTAAAAAAAAAAAAAAAAAAACAGTGGATGCTTAAGAGATTTATTTCAAAGACTGCCAGATTCTTTTCCAGTGCCCTGGCATCCTGGAAGCTCTGGAATATTGTAGAATTCATTTAAAAATAAAGACCTCAGTTTCGTGATTAGAAATTTAATTGCTCTTGATCGCTGTGTTTGCATATATATGTAAGTATATGCTGTGTGTAGTATGTTTGTCATGTTTAGATAAATTTATTAACACAGCTATAGAAAGAATATAACTGATTTTTTTTTCCCTTCCTCTTCCCTTTCTCTCTTTCTGAATTTTCAAG
Seq C2 exon
ATTTAGACTTTCTTGTACCGAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGATGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009242:ENSBTAT00000012184:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATTAGAGGATTCAGAACCAGA
R:
CTCTGTATTTTGCTTATGACGTGT
Band lengths:
207-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development