MmuINT0178519 @ mm9
Intron Retention
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83933970-83934889:+
Coord C1 exon
chr6:83933970-83934068
Coord A exon
chr6:83934069-83934770
Coord C2 exon
chr6:83934771-83934889
Length
702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TCTTTCTTTCTGTCTTTTAGATT
3' ss Score
12.94
Exon sequences
Seq C1 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
Seq A exon
GTAAAGTAAAAAAATGACATGTTTTTCTTATACCCATGAAGTCAGAAGTGAGCAGGTTAACCTTGCTTGGTGTTCCTGAATACAACTTCTCTAGGACTTTTTTTTTTTATTTTAAATCCTGGCATGGATGTTTTTATTTCATTCTTGAAGGCTGGGATATGCTTCTTGTTTTGTTGTTATACTATAATTGCTGTTATGGTGAAAACTGAGTTATACTTCCCCAAGCAAAAACTCCAGTTATTAATAGGAAACTTTGCTTACAGCCAACTACTATGCTGAGTTGAAGGGCTTTTACTTGTTTAGCAGCCCAACATTGTGCTGCTTCTCCATTTTGTAACTTAACAGGGTGTTTCTGAGATGTTTGTTTTCTACTCTCTCACTCTTCGACGTATATTCAAAGCCGTTAGCATTCTGGCTTCTCTTGAGACGCTCAATATATATATTACATATTGTTAAAGATACATGTCTTAAACTGCTAGGGGATAGAGCTAAGTAGTAGAGTGCCCTAGGTTCAAGATCCTCAAAATAAATCTGTGTTTTGTGACTTCATTGCTGTCTTAAGTATATAGCAGTGTGTGTTCTGTGTGTGTGGTGGGGTGGGGTGAGGTAATACTGTGTGTTAAATGTTCTCCCCAGATTTGGATAAAGTGATTGACACACTGTTGATGGAGTTTTCTCTTTGTCTTTCTTTCTGTCTTTTAG
Seq C2 exon
ATTTGGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGTCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGCAAATCACTGCAAGAGCACACGTCATAAACAAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-Zfml:NM_001166371:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACGCTGAACTAAAGGA
R:
TGTATTTTGTTTATGACGTGTGCTCT
Band lengths:
214-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: