RnoINT0168514 @ rn6
Intron Retention
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115682513-115683500:+
Coord C1 exon
chr4:115682513-115682611
Coord A exon
chr4:115682612-115683381
Coord C2 exon
chr4:115683382-115683500
Length
770 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TCTTTCTTCCTGTCTTCTAGATT
3' ss Score
11.53
Exon sequences
Seq C1 exon
TTGATGAAGCTGAACTAAAGGATTTAGAACCTGATGAAAAACGTAGGAAGATTGAAGACTCTTCTATAGGCAAATCAGTGACATCTGATGTCTCTGGAG
Seq A exon
GTAAAGTAAAAAATGACATTTGCTTTTTAATACCTGTGAAGTCAAAAGTGAGCAGGTTAACCTTGCCTGGTGTTCCTGAATACAACTTATCTAGGGTATTTTTTATTTAATCCTGGCATGGATGTTTTCATTTTAGTCTTGAAGGCTGGGATATGCTTTTTTTCTTGTTGTACTCTGTTTGCTGCTATGGTAAAAACTGGGTTATATGTCCCCAAGCAAAAACTCCAGTTACTAATAGGAAACTTTGCTTGTAACCACTATGCTGAATTGAAGGGTTTTTTACTTGTTTAGCAGCCCAGCATTGTGTAGCTTTTCCATCTTTAACGTTAATAGGGTGTTTTTGAGATGTTTATCTTCTACTCTCTCATTCTTTTTTTTTTTTTTTTTTGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTGGGCAAGTGCTCTACCACTGCGCTAAATCCCCAACTACTCTCTCATTCTTTAACCTACGTTCGAAGCCATTAGCATTCTGGCTTCTCTGGAGATTCTGGAATAAAGATGCATGTTTTGAACTGCTAGGAGATAGAGCTTAGTAGTAGAGTGTCCTAGGTTCAAGATCTTCAAATAAAATAAATCCATGTTTTATGGCTTCATTGCTGTTCTAAGTATACAGCAGTATGTACTCTGTGTGTGTGGGTGGGGTGTACTATGTGTTAGGTGTGCTTGCCAGGTTCGGATAAAGTGATCGATTGACACATTGTTGATGGATTTCTCTGTCTCTTTCTTCCTGTCTTCTAG
Seq C2 exon
ATTTAGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGCCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGCAAATCACTGCAAGAGCACACGTCACAAACAAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501:ENSRNOT00000019617:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAAGCTGAACTAAAGGATTT
R:
TGTATTTTGTTTGTGACGTGTGCT
Band lengths:
215-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]