HsaINT0187955 @ hg19
Intron Retention
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71658457-71660413:+
Coord C1 exon
chr2:71658457-71658558
Coord A exon
chr2:71658559-71660294
Coord C2 exon
chr2:71660295-71660413
Length
1736 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
TGTCTCTTCTTATCCTCTAGAAT
3' ss Score
11.02
Exon sequences
Seq C1 exon
TTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGG
Seq A exon
GTAAAGTTAAAATGACATTTTTTTCTTACCCATATGAAATTTAAAAGTCGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGCGGGTGGATCACTAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCCGTCAGTACTAAAAGGTACAAAAAATTAGCCGGACGTGGTGGCGGGCGCCTGTAGTCCAAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAACAAAAACACCATAATAAGTATTCTATTGTTTTAGGTGAGTAATTGGGTAACCTTGGCTGCATTGTCATTTTATAGTGGAAATTTGCATGTTTTACACAGTGGCATTTTTGAAGACAGCTTACTGGGCTGTTTTTACCTGAGAAGGATATTTTTACTGCACTCTTGAAATCTGGGATGTATCTCCTCTTTTATTCCTGGTGCTTTCTTTGCCACTCTGGTGAGAATTGAGTTATATTTGCCCAGGCAGAAAGTCACTCCAGTTAAGCAGAACATGCTGCAAATCTTTGCTAGCCGACTTTGTTCATGGTCAGCTAAGGTGAGCTGAGGGAGACCTTATTCAGCCATCATACTCCTCAATCAGACAGTTGCCCATCATTCTACCTCTTCTCTCTCTTTTATTTTAATGGGATTCCTAAGAGGTTTATTTTTATTATATTTTATTTTGAGACAGGGTCTCATTCTGTCAGCCAGGCTGGAGTGCAGTGATGTGATCTCAGCTAACTGCAACCCTTTCCTCCCAGGCTCAAGCAATCCTCTCACCTCAGCCTCATGAGTAGCTGGGACTACAGGCGTCTACCACCACACCTGGCTAGTTTTTGTATTTTTGGTAGATACAGGGTTTCACCTTGTTGCTTAGGCTGGTCTCAAACCCCTGAGCTCAAGCAGTCTGTCCGCCTTGGCCTCCCAAAGTGCTGGGATTATAGGCTTGAGCCACTTCTCCCAGCCAGAGGTATATTTTAGACTGTTAGGTTCTTATCTAATGACTTGGTATTCTGAAGGATTATTGAACAGTTCTTTGTTATCCGAAGATTCTCCTTGGGAATCTATTCAACTTGGCATTATACCAAAGCAGTGGCATACTGGCATTCCCTAGAGGTTCTGGAATAGTATAGAATGTGTTAACGAAATAAAGACTTACGTTTTCTGATTAAAATTACTACTATTGATCCCTAAATTTATAGCAGTGTGTACTGTTCTTATATTTAAGTATATACTGTGCTTAATATTTTTGTCGTGTTTAAATTGATGAAGGCCAGTTGTGGCTCACACGTGTAATCCCAGCACTTTGGGAGACCAAGGCAGGCACATCCTATAGGGGAGGTCAGGAGTTCGAGACCAGCCTGGGCAACATGATAAAACCCATCTCTACTAAAAGTACAAAAGTAGCCAGGCGCGGTGGCGCACACCTGTAATCCTAGCTATTCGGGAGCCTGAGGCAGGAGAATCACATGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGACATCGCGCCACTGCCCTCCAACCTGGATGACAGAGTGAGACTCCGTCTCAAATAAATGAATAAATCGATGAACACAACTGGAGATTAATTATTGTTAATTTTCTTCTTGTCTCTTCTTATCCTCTAG
Seq C2 exon
AATTAGACTTTCTTGTACCTAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGGTGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-ZNF638:NM_001014972:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=0.350
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGGAATCTGGATTAAAGGA
R:
TTTTGCTTATGACGTGTACTCTTGC
Band lengths:
214-1950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)