MmuINT0178519 @ mm10
Intron Retention
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83983976-83984895:+
Coord C1 exon
chr6:83983976-83984074
Coord A exon
chr6:83984075-83984776
Coord C2 exon
chr6:83984777-83984895
Length
702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
TCTTTCTTTCTGTCTTTTAGATT
3' ss Score
12.94
Exon sequences
Seq C1 exon
TTGATGACGCTGAACTAAAGGATTCAGAACCTGATGAAAAACGCAGGAAGACTCAAGACTCTTCTGTAGGCAAATCAATGACATCTGATGTCCCTGGAG
Seq A exon
GTAAAGTAAAAAAATGACATGTTTTTCTTATACCCATGAAGTCAGAAGTGAGCAGGTTAACCTTGCTTGGTGTTCCTGAATACAACTTCTCTAGGACTTTTTTTTTTTATTTTAAATCCTGGCATGGATGTTTTTATTTCATTCTTGAAGGCTGGGATATGCTTCTTGTTTTGTTGTTATACTATAATTGCTGTTATGGTGAAAACTGAGTTATACTTCCCCAAGCAAAAACTCCAGTTATTAATAGGAAACTTTGCTTACAGCCAACTACTATGCTGAGTTGAAGGGCTTTTACTTGTTTAGCAGCCCAACATTGTGCTGCTTCTCCATTTTGTAACTTAACAGGGTGTTTCTGAGATGTTTGTTTTCTACTCTCTCACTCTTCGACGTATATTCAAAGCCGTTAGCATTCTGGCTTCTCTTGAGACGCTCAATATATATATTACATATTGTTAAAGATACATGTCTTAAACTGCTAGGGGATAGAGCTAAGTAGTAGAGTGCCCTAGGTTCAAGATCCTCAAAATAAATCTGTGTTTTGTGACTTCATTGCTGTCTTAAGTATATAGCAGTGTGTGTTCTGTGTGTGTGGTGGGGTGGGGTGAGGTAATACTGTGTGTTAAATGTTCTCCCCAGATTTGGATAAAGTGATTGACACACTGTTGATGGAGTTTTCTCTTTGTCTTTCTTTCTGTCTTTTAG
Seq C2 exon
ATTTGGACTTTCTTGTTCCGAAGGCTGGATTTTTCTGTCCAATTTGCTCCCTCTTCTACTCAGGTGAAAAAGCAATGGCAAATCACTGCAAGAGCACACGTCATAAACAAAATACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016:ENSMUST00000204751:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=67.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGACGCTGAACTAAAGGA
R:
TGTATTTTGTTTATGACGTGTGCTCT
Band lengths:
214-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types