BtaINT0165955 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047761 | ZNF677
Description
zinc finger protein 677 [Source:HGNC Symbol;Acc:HGNC:28730]
Coordinates
chr18:58646761-58650313:-
Coord C1 exon
chr18:58650222-58650313
Coord A exon
chr18:58646871-58650221
Coord C2 exon
chr18:58646761-58646870
Length
3351 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AAATGTGTTTTTCATTTCAGGCA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACTGTCTTCTCAAGACCAGTCTTTGCCTGAAGAAGAAACCTTGAAGAGGAGGAAGAAGAAAGAACAGGAGTCAGGCATGGCTCTTTCTCAG
Seq A exon
GTAAGGTCATATTCTCAGTGGATTCTCAGTCTGTCCTTCCTGAAATGCCCTTCTCTGGACTCACAAATCGTGTCTGACTCTGAAGTGTCCTGTCTGAGTCCTCTACGTGCACACTCACCTGGGGCCTTCCCTCAGGGCCTGTTGTCTCCACTTAGATCCCATCTCCCCATGACCTGGTGACCTGGCCCTTGTGAGCAGGCTCCCCTGGGCGCCATCCTGGGCAGGGCTTCTCACCCACGGGTTGTAGACGGGGTGTCTCAGTGCTGTAGGGAAGCAGAGGTTGCTTAGGGCCCATCTGGATGTGCTGTCTGCTCTCTGTCAGCCAGGATGGAAGTCACGTTCTAATGTGTAGGAATGGTTGGAAAATTCTGGAAAAGGAAAGTAATAAGAGGAAACCAGCTCTGCCTGATTTAATAATGCATTCAAAGCTAAGCAAGTGAATCATGGTGTTTTTGGTTTCAAAATATTAATGATTCAGAATGCAGAAGAAAGTTCAGAAACAGACATCAGGGATTCAGGATGCTTCATTCGATAATTGGCTTTAAAATGTGGAGTCAGTCTAAGTATCTAACAGGAGGTTTTAAAAAATTATTCTCAGTACATTCATCCCACAGGGATAATGGTATTCCTGTAAGGACTGCCTCCTAGCAGGTCTTTTAGGTAAAAAACAAAGACAGCGGAGCACAGAACTTTATCTTTGTCATCAGAGAGGCTATAGCCAAATTCTGGCTCCACCATTATTAATAAATTATTAAATTTTCTTTTAAGATCATGTGAGATATTTATTTATTTATATTTTTGTGGTCAAAATTCCAACAAAGCAGCGGCTTAACATCTTCTTCTCTGTCACCATGCCTCACGTCTCATTGAGGAACCACTGTTGTCAATTTTGTGGCAAGACTCAGCTCAAATTTTGTAACACTGCGTTTCACATCATCATGAGATTTTTAGGAAAAATTCTTCAAGACATGTTTGTGGTAATCCTTTATTATGCACATTTTAAAAATGATCACAGCATGTGGCTGGAAGTGGTTTTCACATTAGTAAACACAGATACTTTGATCTTTACCAGGACATTCTCTTAATGAAGACACAAGGGACCTTTGCAGTTTTTTGTTGACGTAGAGAATGTGTCAGTGGGTACCTCTGAGCCTACTGACTTTTCAGCAGATGTCTGAGGATTTCTTGGGCATCTTAACATGTGACTGCTGGGACAAGAATGGCACATTTGGGATTGCCATGGTGGCCCAGTGGTAAAGAATCTGCCTGCTAATTCAGGATACACGGGACCGATCCCTGATCCAGGAAGGTCCCACATGCCTTGGAGCAACTAAGCCCATGCAACACAACTATTGAGCCTGTTCTCTGGAGCCTGGGAGCTGCTACTACTGAACCCATGAGCCCTAGAGCCTGTGCTTCTAAACAAAAGAAGCCATCACAATAAGACGCCTGTGCACTGCAACTGGAGAGTAGCCCCTACTCACCACAACTAGAGAAAAGCCTGTACAGCAGTGAAGACCCAGCACAGCAAAAAAAAAGAATGGCGCATTTCATATTTTGATAGATTTTGTCAGATGTCCTCCCCTAAAGCTGCAAAGGTTCCATCCCCACTGCCAACCTCTGAGATTGCCTTCAATGTAAGCAAAGCTTGATACTGTATTCTTTTCATCTTCTGAAAATTTGGGGGGAAATCACAATCCTTTGTATCTCTGTTTTCCAACTACTTGTGAGTCAGTTTCGTGCTTTTGTGGAAATAAAACATGATTTTCATACTTTGTTCAGTTCTCTTTTGATATCTTTTTTTAAACATATCTTTTAAAAAGCTATGTTTTGTAGTTGAATTCTTTATACATGTCCTGGTGTCTTTCTTAGTTTAGCATGTCTTTGCTGCTGCTGCTGCTAAGTTGCTTCAGTCGTGTCCGACTCTGTGCTACCCCATAGACAGCAGCCCACCAGGCTCCCCCATCCCTAGGATTCTCCAGGCAAGAATACTGGACTGGGTTGCCATTTCCTTCTCCAGTGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTTGAGACCCAATGGACTGTAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAACAGTACTGGAGTGAGTTGCTTGATCTTGCTTGAGAAGGCCTCACCTGGCATAATTTAAAAACACTGTCTTCTATACAGTTCTAATCTTTCCTGTTTAAAATTATCTCTGTATTTCTTTTCATATTTTTCCATTATGGTTTATCACAGGATACTGAGTAGAGTTCCCTGTGCTCTATAGTAGGACTTTGTTGCTTATCCCTAAATCATCCAGTATTTCTTCAAAGGTCTATTGCTGTGATAAGTTCTTTTTTTTTTTTTTTCATTGAATCTGCTAGATTAATGTACAACATTAGTACATTTCCTTAATGTTGAATCATTTTTTAAAATTAGTGGAGTAAACTCCAGCTGACTTTTGTTAATGACTTCCCTGGTGGCTCAGGTGATAAAGAATCTGCCTGCAATGCAGGAGAACCGGGTTCAATCTCTGGATCAGGAAGATCCCCTGGAGGAGGGTATGGCTACTTACTCCAGTATTCTTGCCTGGAAAATCCCATGGAGAGAGGCGCCTGGGGGGCTACAGTCCATGAGGTCACAAAGAGTAGGACATGACTGAGTAACACTTTTCAAATACCTGAGTTAAATGGACAGATTTATGTTTCTGCATATATGTGGCCCCTGATTCTGCATATATGTGGATCCTGTCATGCTTGAAGACACTGTTCATGCTCTGGCTCCTCCAGGTACTGAATATCATGTAGTGTGTAAAACATAACCTGTATCTCCTCCATATGAACAATCCTGTGTTGGAAAATTTTCATCTGTGTATTTCTTTTATTGTCCTCACAAATGGGAAATCTATAGTGATTCAGTGGATTTGATATCCTTTGCTGGAAAAATATAATAAAACTGAAAAAGTGAAAGTGTTAGTCACTCAGTCATGACCGACTCTACAACCCCATGGACTATAGTCTGCCAGGCTCTTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTAGGTAGCCTTTTCCTTCTCCAGGGTATCTTCCTGACCCAGGGATCAAACCCAGGTCTCCCACATTGCAGGCAGATTCTTTACTGTCTGAGCCACCAGGGAAGCCCCATAAAATTAGGAACAAATAGTTACTCAAAATTACCTTACTCAAAACGATCCATCACCTCAACTGAATCAATCCTTACTGCCTCTTTCCTATTCACATCTTGTGTGAAGGTAAGAACTCTTCAGCTGTTCCTTCAGTGAAAATGTGTTTTTCATTTCAG
Seq C2 exon
GCACAGTTGACTTTCAAGGATTTGGCTATCGAATTCTTTCAGGAGGAGTGGGAATGCCTGGACCTTGCTCAGAGGGCCTTGTACAGGGATGTGATGGTGGAGATCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047761:ENSBTAT00000065944:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(82.9=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development