BtaINT0166081 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47288223-47292062:+
Coord C1 exon
chr18:47288223-47288315
Coord A exon
chr18:47288316-47290662
Coord C2 exon
chr18:47290663-47292062
Length
2347 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ACTACCAGGGAAGTCCAGATTTA
3' ss Score
-34.14
Exon sequences
Seq C1 exon
GATGTTTCATTTCTAAACCAGATGTGATTTCCTTATTAGAACAAGGAAAAGAGCCCTGGAAAGTAGTGAGGAAAGGAAGAAGACAATATCCAG
Seq A exon
GTTAGTAAGCACCAAAAGATCTATGTTGATATATATGTATGAACAACCCAAGGTTTAGGATATTGACCCCCAGCATAGGCAAAAATCTACATATAACTTTTGACTACCCCCGTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCACGGGCAGAGAAGCCTGGTAGGCTGCAGTCCATAGGGTCCCTAAGGGTTGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGTATTGGAGAAGGAAATGGCAACCCACTCTAATGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTTGGACATGGCTGAAGTGACTTAGCAGCAGCAGCACACTGAACTATTAATAGCTTATTGTTGATCAAAAGCCTTACCAATAAGAGTTGATTAACACATATTTTATATGTTATATATATTATATACTATATTCTTATAAGATTAGCTTGAGAAAAGAAAATATTAAGAAAATAATAAAGGAAAATAAATTTACAGTGCTGTACTATATTTATTGATACCAAAGGTTTATGTTGTTTGTTTATAAGATAAATTGTCTGTCAGAACCTACATCAATATTGTCTTATATGATATAAAACACAGTAGGTATTAATGTATTACTAACACTGGACATCTAAAATGAAAAGATAATGTGAAAAAATTAATATTTATTTACAGATATAATAACTCATGCATCAATAATGAAGAAGCAGCAATATGATTGCTTTATGGTAGCCTAGTATAATTGATATGAATGCTTAATAGTGGCCTAGCCTATACAGTAATGAATGAATCAGCATAAAACTTATGGCATATAGTATTACCATCATATTCATAAAATGTATTGAAAACATTTTTTACAAAACCACTTACCTGTGATGATAGGCTGATATATGGTTTCTCTAATTACAAGAGAGAGAAGCACTGTGTACAGTAATGTGATTCTTCGAAAACAAAGTTATAAAACAGTAAGAAAGCTAACACATTAATTTTGTATTAAATATCACTCACCTTATGCCTATGTAAGGATAGCCTATCCACTTCAATACAAGTCTTGTACACAATATTCTACACATATATGTTTGTATATTTATTGAAAAAAGTTCATGTATAAGTGGACCTGTGCAGTTCAAACCCATGTTTTTCAAGGGTCAACTGTATAATAAGGACATAGCTTTAGATGCTGTCAGTAGAGTCAGCCTTAGAGTGACTTAATCTAAGACCTCAGAATGAGAAGGGGTCAGCCATGCAAATAGCCCAAACAGAAGATTTGGGGAAATAGAGCAGACTGAAAAATACACTGAAAGTGGGAATATGTTCTAAGATCTGAAAAGTTGCCTGTGTGTACATATGTGCTCAGTTGCTTAAGTCATGTCCAGCTCTTTGCAACCCCATGGACTGTAGCTTGTCAGGCTCCTCTGTCCGTGGGATTCTCCAGGCAAGAATACTGAAGTGGGTTGTGGCTTCTCCTGGTAGCAGTAAAGAGAACAGTGGTTTGAGGTGATGTATTATAGGTAAGCAGAGGTCTTTTAACAAGTTTGATTTCATTCTAAGAATAAAGAGAAATTGTTGAAAAAATTTAAGTGTGAATTTTTAATCTTTCTCCATCAGAATGATCCTGAGGGGAATATTAAATATATTACTGTCTAGGACTGTAGAATCTGATCCATGTGGTTTCTAAATCATAATATTTGTAAAAAAAACTCCCTTGTGATTCTGATTCATGGTCTCAATATGAGAACCACAGATTTAAAATGTTTGCTTAATCACCAATCTTACTTTCCTACATGAACTTTGATTTTACTGGTGTTGCCTTTTGTTTTTTTGGTTTTTTTCCAAATTGTGTAGCTATTTTTAGAATTTCATTGGGTAGTACTTTGGTTGTCTTTTATTTCTACAAGAGAAATTTTACTTCTTTTTTAAAAATATTACCTGCTGCAGTTTATATATTTTTTAAAATTAATTATTTTTTGCTGCGCTAGGTCTTCATTGCTGTGTGGGGGCTTTCTCTAGTTGCAGCAAGTAGGGGACTGTTCTTCATTGCATTGAGTGGGCTACAATTGTGGTGGCTTCTCTTATTGCAGAGCACAGGCTCTAGGCGCATGGGCTTTAGTAGCTGCAACACACAGGCTCAGTAGTTGCAGCTTGCAGGCCCTAGAGCACAGGCTGAGTAGTTGTGGCACATCAGCTTAGTGGCCCTGTGACTTGCAGGATCTTAGTTCCCAGACCAGTGATTGTACCCATGTCCCCTGCATTGGCAGGTGGATTCTTAACCACTGGACTACCAGGGAAGTCCAGAT
Seq C2 exon
TTACTTCTTTTCGAAAAAGAAAAACCATGTGTTTGCTCTCTTGTTTTCTTTCAGATTTAGAGACCAACTATGAGATCAAGAAGTTATCTTCAGAAAATGACATTTATGAAATAAACTTATCCCAGTGGAAAATTATGGAAAGAATTAAAAACCATGGCCTTAAGAGCTTCATTTTAAAAAATGATTGGGAGTCCAAAAGAAGATTTGAAGGACAAGAGGAATATTTCAACCAAGTGAAAATCACATCTCAAAAAATGTCCCCTTACCAAAAACGCTCATCTCTTTCCTCACGTCAGAGAATTCATTATGTTGAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCCTTTAGAGTCCGCCAACAACTTACATTTCATCACCGAATTCATACTGGTGAGAAACCTTATGAATGTAAGGAATGTGGGATGGCATTTAGACAGACGGCACATCTTACTCGACATCAGAGACTTCATTCTGGTGAAAAACTCTATGAATGTAAGGAATGTGGGGAATCTTTCATGTGTGGCCCAGAACTTAGAGTACATCAGAAAATTCATATTGGTGAGAAACCCTATGTATGTAAAGAATGTGGGAAGGCCTTCAGAGTTCGTGGACAACTTACTCTCCATCAGAGGATTCATACTGGTGAGAAACCGTATGTATGTACAGAATGTGGGAAAGCCTTTAGGCAGTATGCACATCTTACTCGACATCAGAAGCTTAATATTGCTGACAAACTCTATGAATGTAAAGAATGTGGGAAGGCCTTTTTGTGTGGGTCTGGCCTTAGAGTACATCACAAACTTCATACTGGGGAGAAACCCTATGAATGTAAAGAATGTGGGAAGGCCTTTAGAGTACGACAACAACTGACACTCCATCAGAGAATTCATACTGGTGAGAAGCCCTATGAATGTAAGGAATGTGGAAAGACTTTTAGTCGTGGTTATCATCTTATTCTTCATCACAGAATTCATACTGGTGAGAAACCGTATGAATGTAAGGAATGCTGGAAGGCCTTTAGTCGTTACTCACAACTTATTTCACACCAGAGTATTCATATTGGTGTTAAACCCTATGACTGTAAGGAATGCGGGAAGGCCTTTAGACTACTCTCACAACTTACACAACATCAGAGTATTCATATTGGTGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAGATTGCGCCAAAAACTTACTCTACATCAGAGCATTCATACTGGTGAAAAACCTTTTGAATGTAAGGAATGTAGGAAAGCCTTTAGACTTAATTCATCTCTTATTCAACATCTGAGAATTCATTCTGGTGAGAAACCCTATGAATGTAAGGAATGTAAGAAGGCCTTTAGACAACATTCACACCTTACCCATCATCTGAAAATTCATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464:ENSBTAT00000053827:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF127602=Zn_Tnp_IS1595=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=PU(19.2=1.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development