Special

MmuINT0179931 @ mm9

Intron Retention

Gene
ENSMUSG00000058447 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30841053-30847337:-
Coord C1 exon
chr7:30847248-30847337
Coord A exon
chr7:30842539-30847247
Coord C2 exon
chr7:30841053-30842538
Length
4709 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTTTCTTGCTTTCTTTCAGATT
3' ss Score
12.67
Exon sequences
Seq C1 exon
GATGCTTCATTTCTAAGCCAGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGAAGGTTGTGAGGCAAAGAAAACCATGTCCAG
Seq A exon
GTAGGAACTGTTTGTCGCTTGGGCAAGCATTGAGGCAACCCTTCTGATAGTCACTGTCAGCACAGTTGCTGCACATAACGGGAAAGCGGAATGGTGGCTGGTAAGAGAGCGGTGGGGACGAGCCAGCAGGGGAGAGCAGAGTGCTGGGACCTCAGACAGCTTTGCCAGGTTTGTGACCTTTCGCCCCACTCGTGGTGCTGAGACGGAACCTGGTCTCTTGCTCTAGGCAAGTGTTCTACTGTCCCGTTAACCATCAGCCCAGGGAGGCTTTTACGGTTACAGCCAGGGAAGCGTTCTGTCTTCGCCTTTCCTCACAACATTTAACTTTTTAAAGGAGTTATTTATTTTATAAATGGATATGAGTGTTTCACCTGCATGTATGTATGTGCACCACCCGTAGGCCTGGTGCCTGCAGGAGTCAGAAGAGAGTGTTCCATTCCGTCTTGCTTTCCTATGCCTGCATAGACACAGTGGCACAGGCAAGGTATAGAAGAGATGGCTGGTACTTAACAGTTTCAAAGGGTGAACGCATGATCACTGTGGCTGGCATCAGAGCAGCATATTGGTTTGTTGGAGTAATGGAGAGGTGGTACCTTATTTTTTATGTTATTTTCTCAGTAAAATAAGACCATAAGGGCAATATTCTATGCAAACATAATATTCCCATTCTGAGAACACAAAATCTGAGATGGTCCAAAGGGTCTGGCACTAATAAAACCTCACCCACAACTCCTACACTCTAAAATTCATTTTTTAGTCACTTCCTGAAGAAACCTATAATAAATATTAGACTAGGCTCAGTACCCCTTATTCAGAATGCTTGGGAGGAGACATGTTTTCAGATCTCAGGCTGATTATTGTCTTACCTGCATGTTTGTCTGTGTGTCACATGTGTGTCTGGTGCCCAAGGCAGCCAGAAGAGGACATTGTATCTTCTGGAAATAGACATAGAAAGTGGTTGTGAGCCATCATGTGAGTGCTAGGAGTGGAACCCAGGTCCTCTCTAAAAACAGCATGCTCTTCGCTGCTGAGCCATCTCTAGCCCTATATGCCATTGTATACACGGACAGGTAAGACAAAGGAAGAGGGCGTTAGGTGGGGGCTGTACGTCCTGGGCAACGAGTGTAAAGTAAAGGTTGTTTTAGGAAGAGCTGTGTGGGGTTGCCTCAGTGCTGGTGCTGTCTACTCAGGATCAGACAAACTCCTCAGGAGGCCTGCAGTTAAGAGCACTGACTACTCTTCAGAGAACTGGGGTTCAATCTGCAGCACCACATGGCAGCCCACAGCTGTCTATAACTCAATCCCAGGGCATCTGACACCCCAAACAGACATACATACATGCAGTCAAAACACCAATGCACATGACATGAAAGTAAATAAATCGTAAGAAAACCAACGCTGCTCAAGAGATTCGTGATAATCTTCGTCTCTGAGGTGTCCGTTTAGTGAGCTAGCGAGGCTCCAGGAAGGCCTGCCTTTCGTCTGTTGATCATAGTAGCTCCAGGTTAAAAGAACGCATATGCCAGGGCAGCATGCTCAGGGCAGTGTGTTCTTTTACAGCCGTCTTTATTAAGTGTCATGTCATGAGCCAGGTTCTTGGTTCTCAGCTAAATTTAGATGGACTCTCTCTAAAGCTTTTGTAAGTGTTTTTCTTGGAGTATAGCAAGCCTGATCACGTTCTTCATTTGATCTATTTTAGCCAGGCGTGACGGTGCAAGCCTGTAATCCGACTTAGCAGGTTGAGGCAGGAGGATCAGGAGTTCAGTGCCACCCACTGCTCCATGAAACCCTGTCTCAAAAGCCAAGCCAAACAACCAAGGAAAAATGGTTCTGTTAAGTATCATACCTCCTTGGTGGTCAGTTGTCTTTTTCTGGAAGGACAGCTATTGTAGCGAGGTTTTAAGATCCATTACCAGCTGTCTCTGTTCTAATAGTGCTCACTTTGCTGCTCCCTTTAGTTTTGTGTGTCTTGACACAGTCTCCTGCCATTTGTTATTTCTCTGTTTGTTCTTGAGTTGTTGTTTTGGTTTGGTTTTTGTTGTTGTTTTGGTTTTTGTTCTGTGTGTGGAACCCAGGACTCCTTACCTCAGGCAAACCTACAGAGCTACATGGCTACGTTCTTTGCCCTTTATACATGGTGTTTTGAGACAGTGCCCCGCCTGGAATTAACTAAGTTTGCCATACTCTCGTCTCAGCCTCTGGAGTGCTGAGGTCTGGGAACCCTCACCCACCACTGTAAGTTTCTTTTTACCTTTTCGTTTTTGAAAAAAAACAAGGATACTATTTTAAATCTTTTTTCCTATTGACCTAAAGGTTATCTAATTTATATGTTTTAATTTTTGAACTTGCTGTTTTCATTATTTCTAATTTTAGTAGACAAGTCTCATGATTTCAGCTTTTTACACAGACCCACAACTGTAATGATTGAACCCCTCATTCTCTTTGACATGGGTCGTTGAGCACAGGATTTTCCTCTGACTCCCGCTCTTGGCTTGCTGTCCTCTGGTCTGCAGCTACTGCAGCCTTGTCAGCGAGCCCTTCCCATTCAGATATGTGCGAGAGCTTTTGCTGACAGTACCTAGGTACAGCCTCAGAAAATTCAGAAAAGGTCTCTCTCACGAAGGAAGGGGTGGAGAAGTGCAGAGCAAGGGGAGGAAGGGACAGCTGAACAACGTCTATGGAACAGAGGAGTAATAAAGAGAGCCATTCCTCCGGGCTGCACTGTGACGCAAAGACTAAGGAAAGTAATGGACACTGAAGGGGACCCAGCTGAAACAACAACATAAGAAGCCTCCAGTACCACAAGGAAAGAGGAAAGGATGAGCAGAAGGCAGATGCAAAGGAGAGGCATGAGTGAGCTCTCTGTCCCACGTGGTCATATAGCACAAGCTTGGACTCATGAGGAGAATATTCAACCACCCATAGTAAACCATGGGAGATCCGGGCAGAACAAGTATGGAATGATGATAAATAAATGAGTCAAACTCTAAAACTCTATTATGCTGTGAACTTACTGTTTAGCATGGACTAAATAAAGATTGCACCTGTCTTTAAGGAGCCTTTCAGGTAGCAGAAGCTGAAGCTCGAATGGCTCAGTGTTAACTGTGTAAGACCTGTGTTCTACCTTGAGCACTTTTCATAAAATTACAAGAGAGAAGGAGAACCAGTGATAACCGTGGAAGTGTAAGATTGTTGATAATGGAGACGTGGAATGGAGAGAAGGCTCAGTGGTGAGGCACTTGCTGTGTGAGCAAGGGAACCTGGGTAGAAGAGTCTCAGCGTCTATTTAAAAGTCAGTGTGTTTGCTGTCTCAGTGCAGGGTCCCTGGGGCTTGCTGGCTAGCCAGTTTATGTAAACTGGTAAGTAAGTTCCAGGTTCAGACAAATAAGGGTAGGAACTAAGAGACAGGGCTCCGTGGTTAGACTGTTGCTGTTGTAGAGCACACAGGTTCAGTTTCCAAAACCCACATGATGGATCACAAACATCTATAAATCCCTTGCCAGGGGATCCAACACCCTCCTCTGACCTCTGCATGTTCACAGTGCCCATAAATACACGTAGGCAAAACACATTCTTATAAAATAAGTAAATAAGCCCGCTCTGCAGGAGTAGCGAATGCTCTTAACCACTGAACCACCTCCACACCCCAAATGAGAATCTGGTGTGGGGAGATGGTTCAGTGATTAAAGTGCTTGCTGCACAAATGTACCCCAGAAATCGTACCCCAGAAATCGTACCCCAGAAGCTGTGTGTCGATCCTCCAGTAATTCCAGCGTTGGAAGGTGGAGACAGTATTACCTACAGCAAGCTGAAGGCAAAACTATCCATATTGGTGAAGTCTGGATTTGTGTGAAAGAGCCAGTCTTGAGGAGTAAGATGAATGATAGATTGAGGGTGGCTCCTGACATCAAGCTCAGGCCTCTACATGCCCCCCAGCAGTGTGTACCCACACACGTGCAAAGTATGTAGTACACACAAGTACACATCACACATACAAACAAAACACGGAAAACGGAGACGAAAATTACAGTCTTAGCCAGGTGGCTTGGGTGGTATTGAAACAGTATTTGGGTTTTTATTGTTGTTGTTTATTTGTTTTTGTGTTTTTGAGACAAGGTCTCACTGTGTAGCTCTGGCTGTCCTAGAACTCCCTGTGTAGACCAGGCTGGCCTCAAACTCACACAAATCCACCTCCTTTTGCCTCCCAAATGTTGGGATTAGAGACGTGTGCCACCACGCCCAGCTTAAAATGGTGTTTGTAATAAGCTCTGCAGTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGTAACTACATGGTGGCTCACAGCCATCTGTAATGAGATCAGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATTAAATAAATAAATAAGTCGGGGGGCGGGGGGGGAGCTCTGCAGTACTTTTGATCCACGCCTCAGTCCCTGAACCCGTAACTAAAACATTTGCTCAATTACTGCTCTCTCCTATATGAGCTCTCATTTGCTTCATATTCCCTTTTGCTCCCTAAATTATATGAGACTATTTTGAGTTTGGTTGGCCATTACCTTCACTGTCTTCTATTTTTAATGTAGAAGGTTTACTTCTTTAGAAAAAGAAAAATGGCATGTGTTTTCTTTCTTGCTTTCTTTCAG
Seq C2 exon
ATTCGGAAACTAAGGATGAGACCAACCAGGTGTTCTCAGAAAATGGTATTTATGAAATGAATTTATCCCAGTGGAAGATAATGGAAAGAATTGGGAACAGTGGCCTAAAGAGCCTCCTTTTAAAAAATGGATGGGAGTCGAGAAGAAAACAGGAAAGACAAGAGGACCCTCAGGAGGGGTATCTCAGTCAAGTGAGGCACACATCTGAAAGAGTGTCCTCTTATGAGAAGCGCGCATTAACTACACGTCAGAGGATCCACTTTGTGGAGAAACCCTATGAGTGCAATGAATGTGGGAAGGCCTTTAGAGTCCGCCAGCAGCTCACTTTTCATCACAGAATTCACACAGGCGAGAAGCCCTATGAATGTAAGGAGTGTGGGATGGCCTTCAGGCAGACGGCCCACCTTACCAGGCACCAGAGACTGCATTCTGGTGAAAAACTGTATGAATGCAAGGAGTGTGGGCAAGCTTTCATATACGGCCCCGAGCTCAGAGCACATCAGAAGCTTCACACCGGCGAGAAGCCCTACACGTGTAGAGAATGTGGGAAAGCCTTCAGGGTACGGGGACAACTCACTCTCCATCAGAGGATCCATACTGGGGAGAAGCCCTATGTGTGTCAGGAGTGTGGGAAGGCCTTCAGGCAGTTGGCGCACCTCACTCGCCATCAGAAGCTTAATGTCGTCGACAGACTGTACGAGTGTAAAGAGTGTGGGAAAGACTTTTTGTGTGGCTCTGGCCTTAGAGTACATCACAAACTTCACACTGGTGAGAAACCCTATGAGTGCAAGGACTGTGGGAAGGCGTTTAGAGTTCGACAGCAGCTAACGCTCCATCAGAGGAGTCATACTGGGGAGAAGCCCTATGAGTGCACTGAGTGTGGGAAGACCTTTAGTCGGGGCTACCATCTTATTCTCCATCACAGAATCCATACTGGAGAAAAGCCTTACGAATGCAAGGAGTGCTGGAAGGCGTTCAGTCGCTACTCACAGCTTATTTCGCATCAGAGCATCCATATTGGGGTTAAACCCTATGACTGCAAGGACTGTGGGAAAGCCTTCAGACTCCTCTCTCAGCTCACACAGCATCAGAGTGTTCATGCCGGGGAGAAGCCTTACTCTTGTAAGGAATGCGGGAAGTCTTTCAGATTGCGTCAGAAACTTGCTCTCCACCAGAGTATTCATACTGGCGAAAAGCCCTTTGAGTGCAAAGAATGTAGGAAGGCCTTTCGACTTAATTCTTCTCTTATCCAACATCTGAGAATCCATTCTGGTGAGAAACCCTATGAGTGTAAAGAGTGTAAGAAGGCCTTTAGACAACATTCTCACCTCACCCATCATCTGAAGGTTCATACTGTCAAAGTGTGACAAAGTCTTAGCCGTCTCCTAGAACATTCTGTGAATGTTATGGCTAATCTTGCTTATCCATACATGTAACTGACCTGGCATAAGTGGTTTTATATCATTAAAGGAATATACTAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058447-Zfp82:NM_177889:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.238 A=NA C2=0.097
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.7),PF079757=C1_4=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF127602=Zn_Tnp_IS1595=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF097235=Zn-ribbon_8=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000079647





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000077640
          









    
Other Skipping Isoforms:
ENSMUSP00000082929
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:36394111-36405579 
ALTERNATIVE
HsaINT0185548
(ZFP82)
Human
(hg19)
chr19:36885013-36896481 
ALTERNATIVE
HsaINT0185548
(ZFP82)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:49714819-49715038 
BtaINT0166081
(ZNF780B)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"