MmuINT0179931 @ mm10
Intron Retention
Gene
ENSMUSG00000098022 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30056037-30062318:-
Coord C1 exon
chr7:30062229-30062318
Coord A exon
chr7:30057520-30062228
Coord C2 exon
chr7:30056037-30057519
Length
4709 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTTTCTTGCTTTCTTTCAGATT
3' ss Score
12.67
Exon sequences
Seq C1 exon
GATGCTTCATTTCTAAGCCAGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGAAGGTTGTGAGGCAAAGAAAACCATGTCCAG
Seq A exon
GTAGGAACTGTTTGTCGCTTGGGCAAGCATTGAGGCAACCCTTCTGATAGTCACTGTCAGCACAGTTGCTGCACATAACGGGAAAGCGGAATGGTGGCTGGTAAGAGAGCGGTGGGGACGAGCCAGCAGGGGAGAGCAGAGTGCTGGGACCTCAGACAGCTTTGCCAGGTTTGTGACCTTTCGCCCCACTCGTGGTGCTGAGACGGAACCTGGTCTCTTGCTCTAGGCAAGTGTTCTACTGTCCCGTTAACCATCAGCCCAGGGAGGCTTTTACGGTTACAGCCAGGGAAGCGTTCTGTCTTCGCCTTTCCTCACAACATTTAACTTTTTAAAGGAGTTATTTATTTTATAAATGGATATGAGTGTTTCACCTGCATGTATGTATGTGCACCACCCGTAGGCCTGGTGCCTGCAGGAGTCAGAAGAGAGTGTTCCATTCCGTCTTGCTTTCCTATGCCTGCATAGACACAGTGGCACAGGCAAGGTATAGAAGAGATGGCTGGTACTTAACAGTTTCAAAGGGTGAACGCATGATCACTGTGGCTGGCATCAGAGCAGCATATTGGTTTGTTGGAGTAATGGAGAGGTGGTACCTTATTTTTTATGTTATTTTCTCAGTAAAATAAGACCATAAGGGCAATATTCTATGCAAACATAATATTCCCATTCTGAGAACACAAAATCTGAGATGGTCCAAAGGGTCTGGCACTAATAAAACCTCACCCACAACTCCTACACTCTAAAATTCATTTTTTAGTCACTTCCTGAAGAAACCTATAATAAATATTAGACTAGGCTCAGTACCCCTTATTCAGAATGCTTGGGAGGAGACATGTTTTCAGATCTCAGGCTGATTATTGTCTTACCTGCATGTTTGTCTGTGTGTCACATGTGTGTCTGGTGCCCAAGGCAGCCAGAAGAGGACATTGTATCTTCTGGAAATAGACATAGAAAGTGGTTGTGAGCCATCATGTGAGTGCTAGGAGTGGAACCCAGGTCCTCTCTAAAAACAGCATGCTCTTCGCTGCTGAGCCATCTCTAGCCCTATATGCCATTGTATACACGGACAGGTAAGACAAAGGAAGAGGGCGTTAGGTGGGGGCTGTACGTCCTGGGCAACGAGTGTAAAGTAAAGGTTGTTTTAGGAAGAGCTGTGTGGGGTTGCCTCAGTGCTGGTGCTGTCTACTCAGGATCAGACAAACTCCTCAGGAGGCCTGCAGTTAAGAGCACTGACTACTCTTCAGAGAACTGGGGTTCAATCTGCAGCACCACATGGCAGCCCACAGCTGTCTATAACTCAATCCCAGGGCATCTGACACCCCAAACAGACATACATACATGCAGTCAAAACACCAATGCACATGACATGAAAGTAAATAAATCGTAAGAAAACCAACGCTGCTCAAGAGATTCGTGATAATCTTCGTCTCTGAGGTGTCCGTTTAGTGAGCTAGCGAGGCTCCAGGAAGGCCTGCCTTTCGTCTGTTGATCATAGTAGCTCCAGGTTAAAAGAACGCATATGCCAGGGCAGCATGCTCAGGGCAGTGTGTTCTTTTACAGCCGTCTTTATTAAGTGTCATGTCATGAGCCAGGTTCTTGGTTCTCAGCTAAATTTAGATGGACTCTCTCTAAAGCTTTTGTAAGTGTTTTTCTTGGAGTATAGCAAGCCTGATCACGTTCTTCATTTGATCTATTTTAGCCAGGCGTGACGGTGCAAGCCTGTAATCCGACTTAGCAGGTTGAGGCAGGAGGATCAGGAGTTCAGTGCCACCCACTGCTCCATGAAACCCTGTCTCAAAAGCCAAGCCAAACAACCAAGGAAAAATGGTTCTGTTAAGTATCATACCTCCTTGGTGGTCAGTTGTCTTTTTCTGGAAGGACAGCTATTGTAGCGAGGTTTTAAGATCCATTACCAGCTGTCTCTGTTCTAATAGTGCTCACTTTGCTGCTCCCTTTAGTTTTGTGTGTCTTGACACAGTCTCCTGCCATTTGTTATTTCTCTGTTTGTTCTTGAGTTGTTGTTTTGGTTTGGTTTTTGTTGTTGTTTTGGTTTTTGTTCTGTGTGTGGAACCCAGGACTCCTTACCTCAGGCAAACCTACAGAGCTACATGGCTACGTTCTTTGCCCTTTATACATGGTGTTTTGAGACAGTGCCCCGCCTGGAATTAACTAAGTTTGCCATACTCTCGTCTCAGCCTCTGGAGTGCTGAGGTCTGGGAACCCTCACCCACCACTGTAAGTTTCTTTTTACCTTTTCGTTTTTGAAAAAAAACAAGGATACTATTTTAAATCTTTTTTCCTATTGACCTAAAGGTTATCTAATTTATATGTTTTAATTTTTGAACTTGCTGTTTTCATTATTTCTAATTTTAGTAGACAAGTCTCATGATTTCAGCTTTTTACACAGACCCACAACTGTAATGATTGAACCCCTCATTCTCTTTGACATGGGTCGTTGAGCACAGGATTTTCCTCTGACTCCCGCTCTTGGCTTGCTGTCCTCTGGTCTGCAGCTACTGCAGCCTTGTCAGCGAGCCCTTCCCATTCAGATATGTGCGAGAGCTTTTGCTGACAGTACCTAGGTACAGCCTCAGAAAATTCAGAAAAGGTCTCTCTCACGAAGGAAGGGGTGGAGAAGTGCAGAGCAAGGGGAGGAAGGGACAGCTGAACAACGTCTATGGAACAGAGGAGTAATAAAGAGAGCCATTCCTCCGGGCTGCACTGTGACGCAAAGACTAAGGAAAGTAATGGACACTGAAGGGGACCCAGCTGAAACAACAACATAAGAAGCCTCCAGTACCACAAGGAAAGAGGAAAGGATGAGCAGAAGGCAGATGCAAAGGAGAGGCATGAGTGAGCTCTCTGTCCCACGTGGTCATATAGCACAAGCTTGGACTCATGAGGAGAATATTCAACCACCCATAGTAAACCATGGGAGATCCGGGCAGAACAAGTATGGAATGATGATAAATAAATGAGTCAAACTCTAAAACTCTATTATGCTGTGAACTTACTGTTTAGCATGGACTAAATAAAGATTGCACCTGTCTTTAAGGAGCCTTTCAGGTAGCAGAAGCTGAAGCTCGAATGGCTCAGTGTTAACTGTGTAAGACCTGTGTTCTACCTTGAGCACTTTTCATAAAATTACAAGAGAGAAGGAGAACCAGTGATAACCGTGGAAGTGTAAGATTGTTGATAATGGAGACGTGGAATGGAGAGAAGGCTCAGTGGTGAGGCACTTGCTGTGTGAGCAAGGGAACCTGGGTAGAAGAGTCTCAGCGTCTATTTAAAAGTCAGTGTGTTTGCTGTCTCAGTGCAGGGTCCCTGGGGCTTGCTGGCTAGCCAGTTTATGTAAACTGGTAAGTAAGTTCCAGGTTCAGACAAATAAGGGTAGGAACTAAGAGACAGGGCTCCGTGGTTAGACTGTTGCTGTTGTAGAGCACACAGGTTCAGTTTCCAAAACCCACATGATGGATCACAAACATCTATAAATCCCTTGCCAGGGGATCCAACACCCTCCTCTGACCTCTGCATGTTCACAGTGCCCATAAATACACGTAGGCAAAACACATTCTTATAAAATAAGTAAATAAGCCCGCTCTGCAGGAGTAGCGAATGCTCTTAACCACTGAACCACCTCCACACCCCAAATGAGAATCTGGTGTGGGGAGATGGTTCAGTGATTAAAGTGCTTGCTGCACAAATGTACCCCAGAAATCGTACCCCAGAAATCGTACCCCAGAAGCTGTGTGTCGATCCTCCAGTAATTCCAGCGTTGGAAGGTGGAGACAGTATTACCTACAGCAAGCTGAAGGCAAAACTATCCATATTGGTGAAGTCTGGATTTGTGTGAAAGAGCCAGTCTTGAGGAGTAAGATGAATGATAGATTGAGGGTGGCTCCTGACATCAAGCTCAGGCCTCTACATGCCCCCCAGCAGTGTGTACCCACACACGTGCAAAGTATGTAGTACACACAAGTACACATCACACATACAAACAAAACACGGAAAACGGAGACGAAAATTACAGTCTTAGCCAGGTGGCTTGGGTGGTATTGAAACAGTATTTGGGTTTTTATTGTTGTTGTTTATTTGTTTTTGTGTTTTTGAGACAAGGTCTCACTGTGTAGCTCTGGCTGTCCTAGAACTCCCTGTGTAGACCAGGCTGGCCTCAAACTCACACAAATCCACCTCCTTTTGCCTCCCAAATGTTGGGATTAGAGACGTGTGCCACCACGCCCAGCTTAAAATGGTGTTTGTAATAAGCTCTGCAGTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGTAACTACATGGTGGCTCACAGCCATCTGTAATGAGATCAGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATTAAATAAATAAATAAGTCGGGGGGCGGGGGGGGAGCTCTGCAGTACTTTTGATCCACGCCTCAGTCCCTGAACCCGTAACTAAAACATTTGCTCAATTACTGCTCTCTCCTATATGAGCTCTCATTTGCTTCATATTCCCTTTTGCTCCCTAAATTATATGAGACTATTTTGAGTTTGGTTGGCCATTACCTTCACTGTCTTCTATTTTTAATGTAGAAGGTTTACTTCTTTAGAAAAAGAAAAATGGCATGTGTTTTCTTTCTTGCTTTCTTTCAG
Seq C2 exon
ATTCGGAAACTAAGGATGAGACCAACCAGGTGTTCTCAGAAAATGGTATTTATGAAATGAATTTATCCCAGTGGAAGATAATGGAAAGAATTGGGAACAGTGGCCTAAAGAGCCTCCTTTTAAAAAATGGATGGGAGTCGAGAAGAAAACAGGAAAGACAAGAGGACCCTCAGGAGGGGTATCTCAGTCAAGTGAGGCACACATCTGAAAGAGTGTCCTCTTATGAGAAGCGCGCATTAACTACACGTCAGAGGATCCACTTTGTGGAGAAACCCTATGAGTGCAATGAATGTGGGAAGGCCTTTAGAGTCCGCCAGCAGCTCACTTTTCATCACAGAATTCACACAGGCGAGAAGCCCTATGAATGTAAGGAGTGTGGGATGGCCTTCAGGCAGACGGCCCACCTTACCAGGCACCAGAGACTGCATTCTGGTGAAAAACTGTATGAATGCAAGGAGTGTGGGCAAGCTTTCATATACGGCCCCGAGCTCAGAGCACATCAGAAGCTTCACACCGGCGAGAAGCCCTACACGTGTAGAGAATGTGGGAAAGCCTTCAGGGTACGGGGACAACTCACTCTCCATCAGAGGATCCATACTGGGGAGAAGCCCTATGTGTGTCAGGAGTGTGGGAAGGCCTTCAGGCAGTTGGCGCACCTCACTCGCCATCAGAAGCTTAATGTCGTCGACAGACTGTACGAGTGTAAAGAGTGTGGGAAAGACTTTTTGTGTGGCTCTGGCCTTAGAGTACATCACAAACTTCACACTGGTGAGAAACCCTATGAGTGCAAGGACTGTGGGAAGGCGTTTAGAGTTCGACAGCAGCTAACGCTCCATCAGAGGAGTCATACTGGGGAGAAGCCCTATGAGTGCACTGAGTGTGGGAAGACCTTTAGTCGGGGCTACCATCTTATTCTCCATCACAGAATCCATACTGGAGAAAAGCCTTACGAATGCAAGGAGTGCTGGAAGGCGTTCAGTCGCTACTCACAGCTTATTTCGCATCAGAGCATCCATATTGGGGTTAAACCCTATGACTGCAAGGACTGTGGGAAAGCCTTCAGACTCCTCTCTCAGCTCACACAGCATCAGAGTGTTCATGCCGGGGAGAAGCCTTACTCTTGTAAGGAATGCGGGAAGTCTTTCAGATTGCGTCAGAAACTTGCTCTCCACCAGAGTATTCATACTGGCGAAAAGCCCTTTGAGTGCAAAGAATGTAGGAAGGCCTTTCGACTTAATTCTTCTCTTATCCAACATCTGAGAATCCATTCTGGTGAGAAACCCTATGAGTGTAAAGAGTGTAAGAAGGCCTTTAGACAACATTCTCACCTCACCCATCATCTGAAGGTTCATACTGTCAAAGTGTGACAAAGTCTTAGCCGTCTCCTAGAACATTCTGTGAATGTTATGGCTAATCTTGCTTATCCATACATGTAACTGACCTGGCATAAGTGGTTTTATATCATTAAAGGAATATACTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098022:ENSMUST00000080834:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF127602=Zn_Tnp_IS1595=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types