BtaINT0166137 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39364773-39365713:+
Coord C1 exon
chr18:39364773-39364918
Coord A exon
chr18:39364919-39365608
Coord C2 exon
chr18:39365609-39365713
Length
690 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GCCTACTTGTTGTGTTGCAGGTC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GTGACAGTGAGGGAGATGAAGAGGAGACCACACAAGATGAAGTCTCTTCCCATACGTCAGAGGAAGATGGAGGAGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGAAAGAAAGTAGTAGAGCATGAG
Seq A exon
GCAAGTGACAAATGGCTCCTGAGTGTGGGCACCCCTTCCCCTTCTGTTCTGTCCAGATGCCTCTCTTCCACCTGAAGGCACTCTCGCCTCTGAGGGTCTCCCGGGTTTTCAGACGTAGCCTCTCTTCTTTCACAGCACCAGGTACCCAACCCTCAGGCACACAGTTCTCATCACACCCAGCCTTCCTTTTCCACCCACCCACATATCACTTTACCCACACGCAGCTCCTGCTCCCAAAGCTCCCCACTTCTTTCCGGCAGAATGTCCATCTTTGTAAAACTATTAGCTGACTTGCTGAGATGTACTCTTGAATACACTTGCAAATTTCAGTCACAGTGTTAAATGAGGTGCCATCTTTTCACTAAATTGTCTCTTGAGGATTCTTGCAAGAGGCATGGCAGGAGGGAAAGCTAGTTTTCTCCCTACAGAGTTTACCTTAGGGTGGAAAATTAGATAAGCTCTCTGGAGTAATTCTATGTCTTCATGGCAGGAAGCCTTGGAAAAAATGAAGATGGGAACAAATTTAATTCCCTTTCCCCTGTCACTCTCCTTTGACCCATGATGGGAACCTGAGAATAATGGATGATAAGAGGTTGTGTTCCTTTTAACAGGATACCCTTTTAAAAGAAGCAGGGGCAGGGAAGAGACTGGTAAACCATCTTAGTGAATTGCCTACTTGTTGTGTTGCAG
Seq C2 exon
GTCACGGAGAATTTGCATTCTGACCCGTTACTTGGACTCTGCCAGTGTCCCCTCTGCCAGCTCGACTGTGGGAGTCGGGAGCAGCTGATTGCTCACGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438:ENSBTAT00000032310:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(37.9=62.9),PF127732=DZR=PU(26.6=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAGGGAGATGAAGAGGA
R:
TGGTACACGTGAGCAATCAGC
Band lengths:
247-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development