GgaINT0023780 @ galGal4
Intron Retention
Gene
ENSGALG00000000817 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr11:19182323-19183125:+
Coord C1 exon
chr11:19182323-19182465
Coord A exon
chr11:19182466-19183020
Coord C2 exon
chr11:19183021-19183125
Length
555 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
ATGGCTTTCCTTTCCTGTAGGTT
3' ss Score
11.64
Exon sequences
Seq C1 exon
GTGGCAGTGATGATGAGGAAACCACCCACGATGAAGTTTCTTCCCATACTTCAGAGGAGGATGGCTCAATGCTAAAGGTGAAGAAAGAACTGGAGAATGCAGAACAACATGCAGCTGGAACCCCACTGATGAGAGAGAATGAG
Seq A exon
GCAAGTGTATACTGGCACTGCAGTCACATCAGTGTCCAAGGGAGAAACGGTAGGCACTGTCTAGACATCTCTCACTACCCTTAATTTCATATCTTGTTCCAATAATCACCTCCTCCAAACATCATCTCCTGTTTAAGGGAGATAGTTTTGAGATGTTCTTGGGCTGCCAGCAAGAGGAGATAGCAGGGACAAACTGCTGTTCCCCTGCCTGGACAAAATGACTATGAAGTCTGTCTACCTCCTTCAGTTCTTGTACCTTTCCCTTCTGCTACAGAGCAGGCCTTGCCTACTAGAGCCACCGTGCTGGCAAGATCATGGGTGTGAATGGAGGTCATGAGGCTTCTGCTTCTTCCTCCTGAGACAGCAAGAGCTTTGCTAAGAGGCTGCATAAAGGAAGTTTTGGACTGTGAGAATTGCAAACCAGCCCCAACAAGAATGGGCACTGCACTTGATCTGGACCCAGCCGTTGTGCAGTGCTCACTAGATGCTAAGGGGGGTGGGTGGCTATGTGGAGATTAGTGTGCCTTGCACCAAAATGGCTTTCCTTTCCTGTAG
Seq C2 exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817:ENSGALT00000001191:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTGATGATGAGGAAACCA
R:
CTGGTATACATGAGCAATGAGTTG
Band lengths:
246-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]