HsaINT0188475 @ hg19
Intron Retention
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71898041-71898951:-
Coord C1 exon
chr16:71898806-71898951
Coord A exon
chr16:71898146-71898805
Coord C2 exon
chr16:71898041-71898145
Length
660 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GCCTATTTGTTGAATCACAGGTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAG
Seq A exon
GCAAGTGACGATGGCCCCTGGGTCCAGGTCCAGCAATGCCCTACCCTTCTGCCTGCCCTGATGCTGCTCACCCCTGTGGCACAGTCTTGCCTCTGATGGTCTCCTGGGCCTGCATGGGAGGCCTCTTCCTTCATGGCACCAGAACCCACACCTCAGACTCTCAGTTCTCGCCACACTCAGTTTTCCTTTTCCATCCACGAATCGCTGCGCCTGTGCACAGCTCTCTTTCCTGCAGCTCCCCACGTCTTTCCAGACATGAGAGAAACTTTGTTGAAGTAGAAAGCTGACTTCCCAAGGTGGACTCTTGAATGTGCTTGCAAATCTAAGTCAAGGTGTCACCTGGAGTGCCACCTTCTCACTAACTTGTTTCCTGAGGATTCCTGAAAGGAACATGACAGGAAAAACGCTACCCCTGTCTGCAGAGTTTATCTTCAGGGAAAAAAATTGATTGGCTCTCTCTGAGGCAATCCTGTGTCCTCATGGCTGAAAGCCATAATTCCCTCTCAACTATTACTTTTTCCTTCAGCCCACAAAGGGAAGCTAAGAATAACATGCGCCATCAGTCTGGGTTCCTTTTAACAGGATACCCTGTTTAAAAAGCTGGGGCAGGGAAGAGATGAGTAAAGAGTCCTAATGAGTTGCCTATTTGTTGAATCACAG
Seq C2 exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984-ZNF821:NM_017530:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(39.0=65.7),PF044239=Rad50_zn_hook=PU(23.5=22.9)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAGGGTGATGAAGAGGA
R:
TGGTACACGTGAGCAATCAACT
Band lengths:
247-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)