MmuINT0179938 @ mm9
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112245095-112245758:+
Coord C1 exon
chr8:112245095-112245243
Coord A exon
chr8:112245244-112245653
Coord C2 exon
chr8:112245654-112245758
Length
410 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq A exon
GCAAGTGCACGCAGGCCCGGCCGGCCGGCAGCTTTCCCTCCGCCCCAGCCTGCACCCCCCGAAGCTCTCCCTTCCTCCCCAGCAGAGTGAGAACTACTCTCAGGAGCTTCTCTCTCAGGAGGATGTCTTCAGGTTATATCAGTCAGGCTGTCTTGTGGAACCAGCTTCCAAATACATTGTATCCTAAGGATTCATGCCAGGAACATGTGAAAGGGAATCTAGTCCTTTCCCTGCAGAGTCCTGTGTCCTCGGGGCAGAAAGCCTTGAAAATTGAAGAAATTTAATTTCTTTTATTCAAACGATATTTTATCCTTCAGTCTGCAGTGGGAACCTAAGACTACTGAAGGAGGTGGGGCAGGGAAGAGACTAGTGAAGAGTCTTCATGACTTGCCTGTTTGGTGGATTTGCAG
Seq C2 exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-Zfp821:NM_029468:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(39.0=65.7),PF127732=DZR=PU(26.6=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGTGAAGGTGACGAAGA
R:
CTGGTACACATGTGCAATCAGC
Band lengths:
254-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: