RnoINT0168677 @ rn6
Intron Retention
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41943957-41944598:-
Coord C1 exon
chr19:41944450-41944598
Coord A exon
chr19:41944062-41944449
Coord C2 exon
chr19:41943957-41944061
Length
388 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTGTTTGGTGGATTTGCAGGTC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAGAGAATTAGACAGTGCAGAAGCACCTGTCGGTAGTGGGGACGCACTGGTGGAGCACGAG
Seq A exon
GCAAGTGCACGCAGTTCTTGGCAGCTTTTCTCCTCTACCCCAGCCTGCGCCCCGGAGCTCTCACTTCTTTCAGCACAGTGAGAACTACTCAGGAGCTTCTCTCTCTCAGGATGTTTCCAGGTTAAATCAGTCAGTCTGTCTTGTGGGCCCAGCTTCCAACTACATTGTTTCCTGAGGATTCATGCCAGGAACATGTAGAAGGGGAACTAGTCCTTTTTCTGCAAAGTCCCCTGTCCTCAGGGCAGAAGCCTTGAAAAATGAGGAAATTTAATTTCTTTCAAAGAGTATGTCATCCTTCAGTGTGCAGTGGGAACCTGAGAACTACTGAAAGGTGGGTGGGAAAAGACTAGTGGAGTCTTCACGACTTGCCTGTTTGGTGGATTTGCAG
Seq C2 exon
GTCACAGAGAACCTAAATTCTGACCCCTTACTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCCCATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262:ENSRNOT00000000279:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF056057=zf-Di19=PU(39.0=65.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGTGAAGGTGACGAAGA
R:
CTGGTACACATGGGCAATCAGC
Band lengths:
254-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]