HsaEX0074409 @ hg19
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71898041-71901940:-
Coord C1 exon
chr16:71901815-71901940
Coord A exon
chr16:71898806-71898951
Coord C2 exon
chr16:71898041-71898145
Length
146 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTGTGTGTTCCAGGTG
3' ss Score
8.71
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCA
Seq A exon
GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAG
Seq C2 exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984_MULTIEX1-2/4=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=1.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0105613=Myc_N=PU(33.0=83.7)
A:
NO
C2:
PF056057=zf-Di19=PU(39.0=65.7),PF044239=Rad50_zn_hook=PU(23.5=22.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAAGTATTTGCTGGGCT
R:
GTACACGTGAGCAATCAACTGC
Band lengths:
228-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)