BtaEX6081302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39362125-39365713:+
Coord C1 exon
chr18:39362125-39362250
Coord A exon
chr18:39364773-39364918
Coord C2 exon
chr18:39365609-39365713
Length
146 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTGTGTGTTCCAGGTG
3' ss Score
8.71
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCA
Seq A exon
GTGACAGTGAGGGAGATGAAGAGGAGACCACACAAGATGAAGTCTCTTCCCATACGTCAGAGGAAGATGGAGGAGTGGTCAAAGTGGAAAAAGAGTTAGAAAATGCAGAACAGCCTGTTGGTGGAAAGAAAGTAGTAGAGCATGAG
Seq C2 exon
GTCACGGAGAATTTGCATTCTGACCCGTTACTTGGACTCTGCCAGTGTCCCCTCTGCCAGCTCGACTGTGGGAGTCGGGAGCAGCTGATTGCTCACGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438-'8-11,'8-10,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.980 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF056057=zf-Di19=PU(37.9=62.9),PF127732=DZR=PU(26.6=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAAGTATTTGCTGGGCT
R:
TGGTACACGTGAGCAATCAGC
Band lengths:
230-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]