HsaEX0074409 @ hg38
Exon Skipping
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:HGNC:28043]
Coordinates
chr16:71864138-71880023:-
Coord C1 exon
chr16:71879907-71880023
Coord A exon
chr16:71864903-71865048
Coord C2 exon
chr16:71864138-71864242
Length
146 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTGTGTGTTCCAGGTG
3' ss Score
8.71
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTAGCATCTTGCAAGGAGGTAGTAACATATCCAGTCGTGAAACTGGGAAAGACCAGAGCTCTTGCATCAGGGAAACATGTCCCGTCGGAAACAGACAAATCCAAATAAAGTTCACT
Seq A exon
GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAG
Seq C2 exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984-'10-29,'10-27,20-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.992 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF056057=zf-Di19=PU(39.0=65.7)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTGCAAGGAGGTAGTAACA
R:
CTGGTACACGTGAGCAATCAACT
Band lengths:
218-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development