RnoEX0101713 @ rn6
Exon Skipping
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41942597-41947561:-
Coord C1 exon
chr19:41947436-41947561
Coord A exon
chr19:41944450-41944598
Coord C2 exon
chr19:41942597-41942763
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTATGTGTTCCAGGTG
3' ss Score
6.77
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GGGATCAAGTATTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGAGTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTCTCCAACATCTAAGAGACCAGGACTCCAGTAGCA
Seq A exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAGAGAATTAGACAGTGCAGAAGCACCTGTCGGTAGTGGGGACGCACTGGTGGAGCACGAG
Seq C2 exon
CATACTGCAGCGGTGGTGAGTGCCAAGAGTTACATGTGCCCTGTCTGTGGACGGGCCCTTAGCTCCCCAGGGTCTCTGGGTCGCCACCTCCTAATCCACTCAGAAGATCAGCGGTCTAACTGTGCTGTGTGTGGAGCCCGCTTTACTAGCCATGCTACTTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262_MULTIEX1-2/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF056057=zf-Di19=PD(57.6=60.7),PF116003=CAF-1_p150=PU(3.9=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTAGAAGAACAAGCCCG
R:
GCTCCACACACAGCACAGTTA
Band lengths:
247-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]