MmuEX6038346 @ mm10
Exon Skipping
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109706357-109721858:+
Coord C1 exon
chr8:109706357-109706419
Coord A exon
chr8:109721195-109721343
Coord C2 exon
chr8:109721754-109721858
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTATGTGTTCCAGGTG
3' ss Score
6.77
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
CTTCACATCACTCGGATTCGGGCGACTTTACTTTGCTTCGTGGGAACCTCATCAGAGCTGGAG
Seq A exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq C2 exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728_MULTIEX1-5/6=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.086
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF056057=zf-Di19=PU(39.0=65.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACATCACTCGGATTCGGG
R:
ACACATGTGCAATCAGCTGCT
Band lengths:
162-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types