MmuEX6038346 @ mm9
Exon Skipping
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:112241662-112245758:+
Coord C1 exon
chr8:112241662-112241787
Coord A exon
chr8:112245095-112245243
Coord C2 exon
chr8:112245654-112245758
Length
149 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTATGTGTTCCAGGTG
3' ss Score
6.77
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GGGATCAAGTCTTTGCTGGGTTAGAAGAACAAGCCCGACAGGCAATGATGAAAACCGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTACGAGATCAGGACTCCAGTAGCA
Seq A exon
GTGACAGTGAAGGTGACGAAGAGGAGACCACACAAGATGAAGTATCTTCCCACACATCAGAGGAAGATGGTGGGGTAGTCAAAGTGGAAAAGGAATTAGAGACTGCGGAAGCACCTGTCAGTAGTGGGGACGCACTAGCAGAGCGCGAG
Seq C2 exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728-'6-8,'6-6,8-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF056057=zf-Di19=PU(39.0=65.7),PF127732=DZR=PU(26.6=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAAGTCTTTGCTGGGT
R:
ACACATGTGCAATCAGCTGCT
Band lengths:
226-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: