BtaINT0166138 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021438 | ZNF821
Description
Bos taurus zinc finger protein 821 (ZNF821), mRNA. [Source:RefSeq mRNA;Acc:NM_001038152]
Coordinates
chr18:39365609-39366819:+
Coord C1 exon
chr18:39365609-39365713
Coord A exon
chr18:39365714-39366652
Coord C2 exon
chr18:39366653-39366819
Length
939 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GATGAGGCTCTCTTTTCCAGCAC
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTCACGGAGAATTTGCATTCTGACCCGTTACTTGGACTCTGCCAGTGTCCCCTCTGCCAGCTCGACTGTGGGAGTCGGGAGCAGCTGATTGCTCACGTGTACCAG
Seq A exon
GTATGGTTTGGGGAGCCACATGCTCTGGAAAACAGGCGCCAGTGACTTGTTTAGCCTTTGCCTCCAACCCCAGAAAGAACCTTGGGTTGTTTTTGCTTCCACCCAGATTCCACTCTTAGAGAATAAGTAGGATACATTGAGTGAATATGTTCTGGGTTCCCAGGCAGACATTGTGAAAATTAAGTATCATTTTTTCCCTAAAGTAATTAATGTATATTTTATATAGTGAGAGAGAAATGGGCTTTGTTTTAAAGAAGAAAAAAGTGAATTAACAGATGTTTCTGAAAGACTGGAGAAAGTTAGTGTAAACCAACACATCAGAACAAGACAACCGTCCAGTTGCAGAACACATGTGTCATGATTTGTAGTGAACAGGCATCAGCACACATGGCAGCCTGGGTTTTACCATAAAGATCACTGGTTCATGAGGGGAAGCATTTCTTCAGAAGACTGACACTGAAAGATGGAAGGAAAGGCTGTGCATTTAAATACCTTTTGGGTACCAGTCTTCCCAGCCAGCTTCTAGACTTGGCCTTCAGTGCTCCTTTAAAGTGTACTTGTTGGGCTTCCCTGGTGGCTCAAGATGGTAAAGTGCATTTGTACCTACACAGCATGGGGCAGACAGACCATGAGAAATTATCCTGAGCAAAAATTCTTCTCTGGCTCTGAAGAGGAATGTGGCATCTCATTGTTCCCCAAGCCAGCCCCACATCCCAGAACAGAGTCAGAACTCAAATCAGTGAAATCTGAGCAGTGGTGTGGATGGCCTCGCCCTTCTGAAGGCCCTTTAACATGAGCCTGTTCCTTTTCTGGATGCTAAATAGGGAGAAGAGTTCTTGTTCTAAGACTAAGAGGAATGTTTCCCAGAAAGTAGTTTTTCAGTGGGTAGAACTTGTCCTGGAGCTGGTGTGAGTTGACAGATGAGGCTCTCTTTTCCAG
Seq C2 exon
CACACTGCAGCCGTGGTGAGCGCCAAGAGCTACATGTGTCCCGTCTGTGGCCGGGCCCTCAGCTCCCCAGGGTCACTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGGTCGAACTGTGCTGTGTGTGGAGCCCGTTTCACTAGCCATGCCACATTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021438:ENSBTAT00000032310:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(37.9=62.9),PF127732=DZR=PU(26.6=60.0)
A:
NA
C2:
PF056057=zf-Di19=PD(58.6=60.7),PF127732=DZR=FE(69.6=100),PF116003=CAF-1_p150=PU(3.9=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTTGCATTCTGACCCGT
R:
TGTTAAATGTGGCATGGCTAGTGA
Band lengths:
264-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development