HsaINT0188476 @ hg19
Intron Retention
Gene
ENSG00000102984 | ZNF821
Description
zinc finger protein 821 [Source:HGNC Symbol;Acc:28043]
Coordinates
chr16:71895679-71898145:-
Coord C1 exon
chr16:71898041-71898145
Coord A exon
chr16:71895846-71898040
Coord C2 exon
chr16:71895679-71895845
Length
2195 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ATCAAGGCTCTGTTTTACAGCAC
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAG
Seq A exon
GTATGGATGGGGGAGCTGTGTGCTCTGGAACACAAGTGTGGGCAGCTTGTCTGTAGCCCAGATCCTGGTTTGGCCTTTGTCTCTCTCTGGCTCCTGAAGGAGTCTTGGGTTGTCACTTCTATTAAGATTCGTCTTAGGGAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTGTGGGAAGCCGAGGCGGGTAGATCACTTGAAGTCAGGAGTTCGAGACCATCCTGGCCAACATGGCGAAACCCTGTCTCTACCAAAAATACAAATATTAGCCAGGTGTGGTGGCATGCGCCTGTAGTCCCAGCTACTCGGGATGCTGTGACAGGAGAATTGCTTGAACCCAGTAGGCGGAGGTCGCAGTGAGCCAAGATCACGCAATTACACTCCAGCCTGGGTGACAGAGTTAGACTCTGTCTCAAAAAGAAAAAAAAAATTCAGCCCAAAGCCAGGTGTGGTGGCTCACACCCAGAATTCCAGCACTTTGAGAGGCTGAAGTGGGGAGGATTGCTTAACCTCAGGAGTTCAAGACCAGCCTAGGCAACATAGCAAGACCCCAGCCCTACAAAATTTTTTTTTAAATTAGTTGGGCATGGTGGCTTGCACCTGTAGTACCAGTTACTTGGAAGACTGAGGTGGAAGGATAGCTTGAGCCTAGGAGGTTGAGGCTGCAGTGATCATGCTTCAGCTAGGGTGACAGAGTGAGACTGTATTAAAAAAAAAAAAAAAAAAAAGAGATTCTGCTCCAAGCTTCCAACATTTTAGAAAATAAATGAGATATATTAGATAAACACATTCTGGGTTTCCGGGCAGACACACTGTGAAAATTAAGTGATTTTTTTTCTAAATTATTTAATGTATATTTTAAATAGTGAAATAGAAACTAATGTATACTAATAATGAGGGCTTTGTGTTAAAGAAAAGAAAATTAGTTAACATGGGCCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACCTTGGGAGGCCAAGGTGGGCGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTAATAAAATACAAAAAAAATTATCCAGGTGTGGTGGCGCACGCCTATAATCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGCGGAGGCTGCAGTGAGCTGAGATTATGCCACTGCACTCCAGCCTGGGTGACAAAACGAGACGTGTCTTAAAAAAAAAAAATTAGTTAACACAAATGGTATGTTAAAAATTAGTGTGAACCAGGGGATCCGAATACCAGACTTTTGTGTTCTTTTTACCATGATCCAATCACAGGGCACCTGTACCTCCTGGTCGGTGTTGACAAGGTATCAGCACACATGGCAGCCTGGGCTGTACCATAAAGATAGTTGGTTCATGAGGACAAGTATTTCTTCAGAAGACTATCTTGAAAAGATTGAGAAAGCAAGATATAAATACCTGTTGCATACCAGTATTCCAGGCCAGCTTCTAGATTTGGCCTTTATTGTTCCCTTAACACGTAATTTGTACCTGCACAGTGTGAGCCAGGGAGACAGAGAGAAATTATCCGAGACATGAATTCCTCTTAGGCTCTGAAGAGGGCTCTGGCGCCCCACTGTTGTTGTTGTTTTGTTTTGTTTTGTTTTTGAGACAGAATTTCGCTGTATTACCTAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGTGAACTCCACCTCTCAGGTTCAAGTGATTCTCTTGCCTCAGCTTCCCAAGTAGCTGGGACTACAGGCACCTGCCCCCACACCAGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACTGTGCCTGGCTCCCACTGTTCCTTAAGTCAGCCACATGTCCCAGAACGTAGGCAGAGCTCAAGCTAATGAAATCTAAGCAGTGGTCTAAATGGCCAGGGCCTCTAATGTAAGAGACTGACTTTTCTAGGGGCTAAACAGAATACTTGGAAGTTCCTTATTCTGAGACTAAAGAAAGGGGACATTTCCCAAAAGTCATTTCTAAGTGGGTGCAGATTGTCCTGGAGGTAGCGCAAGACTGACAGATCAAGGCTCTGTTTTACAG
Seq C2 exon
CACACTGCAGCAGTGGTGAGCGCCAAGAGCTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCGGGGTCATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGATCTAACTGTGCTGTGTGTGGAGCCCGGTTCACCAGCCATGCCACTTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102984-ZNF821:NM_017530:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7),PF044239=Rad50_zn_hook=PU(23.5=22.9)
A:
NA
C2:
PF056057=zf-Di19=PD(57.6=60.7),PF127732=DZR=FE(68.8=100),PF116003=CAF-1_p150=PU(2.8=8.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)