MmuINT0179939 @ mm10
Intron Retention
Gene
ENSMUSG00000031728 | Zfp821
Description
zinc finger protein 821 [Source:MGI Symbol;Acc:MGI:1923121]
Coordinates
chr8:109721754-109723053:+
Coord C1 exon
chr8:109721754-109721858
Coord A exon
chr8:109721859-109722886
Coord C2 exon
chr8:109722887-109723053
Length
1028 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTAAGGCTTTGTTTTACAGCAT
3' ss Score
5.2
Exon sequences
Seq C1 exon
GTCACAGAAAACCTAAATTCTGACCCCTTACTTCAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCACATGTGTACCAG
Seq A exon
GTATGGAATGGGGAGGGAGCTCTGGGGCTGAGTGCCAGCAGTATAGAGGTCAGATGCTGCAGTGGCCGTTGCCTCTGCAAAGGAAGCTCAGGTTATTGGTTCTACTAGGACTCCTTCCTCCCCTCATAGCATCTTAGGAAATAATGGTTGCATTCTCATACAGATAGATACACTGTAGAATTAAGTATCATGGTCTTGTTTTACTAAATTGTTTAATACAGTCAGTAGTGAAATAAACTAAACTGACTTAACAATGACGGCTTTTAAAGTGGGGTAGGGCCAACATAAATTATATGATGTGAGTCAGTAAGATGGCTCTGGTGGTAAAGCACCTGCTCCCAAGTCTGACCTGAGTCCACCCTTGTTATCCTCTGACCTCTACACACACACTGTGGCATGCTACAAGCACACAGATAAAACACAGAGCGACATATTTTGGGGGTGCCAGTGAAAGTACAAACAAGGAAACAGCGTAAGACATGTCCCCTTAATAGGTACACTACTAAGAGTATGCCTACTCCTAGTGCTCTGTTCTGAGACAACAGTACACAGCCCAGGTTGGACCAAACTTTAGAGATCATACCTGTAAAGATAGTTGGTTCATTAGAAATACTTCTTCAGAAGCCCGAGGAAAGACAGTCCATGAATACTTGTTACACACCACTACTCCTGCCCGGCCCCTTCAGTGTACTCCTAAAATGCACTTGTATCGGTACACTATAGCCAGGGAAGACAAAACTATCAGGAGCATGAATTCCTTTAAAGTCTCTGAGGCGGGCTCTGGAACTCCATTATTCTTCAACCATTCACGTGTCCCAGAATATGGCCAGAACTCACAGTAATAAAATCTGAGCAATGGTCTGAATGGCTGGGCTCCTCTGGAAATCCACTAACACAGTAGGCTGTGCTTTTTCCAGGAGCTAAAAAAATAATCATTCCAAGTCCCTCAGTCTAAGGGAAGGAAAAAGAGGGGTGGAAACTGTCCTGAAAGCAACAAGAAATGGACAGCTTAAGGCTTTGTTTTACAG
Seq C2 exon
CATACTGCAGCAGTGGTGAGTGCCAAGAGTTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCAGGGTCTTTGGGTCGCCACCTCCTAATCCATTCAGAAGATCAGCGGTCCAACTGCGCTGTGTGCGGAGCCCGTTTTACCAGCCACGCCACTTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031728:ENSMUST00000212964:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7)
A:
NA
C2:
PF116003=CAF-1_p150=PU(2.8=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAAAACCTAAATTCTGACCCC
R:
CTGTTAAAAGTGGCGTGGCTG
Band lengths:
270-1298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types