RnoINT0168678 @ rn6
Intron Retention
Gene
ENSRNOG00000000262 | Zfp821
Description
zinc finger protein 821 [Source:RGD Symbol;Acc:1306674]
Coordinates
chr19:41942597-41944061:-
Coord C1 exon
chr19:41943957-41944061
Coord A exon
chr19:41942764-41943956
Coord C2 exon
chr19:41942597-41942763
Length
1193 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTTAAGGCTTTGTCTTGCAGCAT
3' ss Score
5.87
Exon sequences
Seq C1 exon
GTCACAGAGAACCTAAATTCTGACCCCTTACTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGTGGGAGTCGGGAGCAGCTGATTGCCCATGTGTACCAG
Seq A exon
GTATGGAATGGGGACGGAGCTCTGGGACTGAGTGCCAGCAGTTTAGAGGTCAGGTGCTGCGGTGGCCTTTGCCTCTGCACGGGAAGCTCAGGTTATTGGTTCTACTAGGACTCATTCCACCCCTCAGAGCAGCTTAGGAAGTATTGGCTGAGTTCCCAGACAGATAGATAGATACACTGTAGAATTAAGTGTCATGATCTTATTTTACTAAATTGTTTAATACATTCAGTAGTGAAATAGAAACTGAGGCTTTTAAAGATAGGGTAGGGCCAACATAAATTATACAGTGTGAGTCAGCAAGATGACTCTGGTGGTGAAGGCCCCTGCTATCAAGCCTGATGACCTGAGTACAGTCCCCAGGACCTACCCAGTGGAAGGAGAGAACTGATTGCCCTTGTTATCCTCTGACCTCTACACACACATACTGTGGAATGCACAGGTACAGGCATGCTACAGGCACACAGATAAAACACAGTGACATATTTTAAGGTGCCAGTGAAAATACAAATAGGAAAACAAGATAAGACATTTTCCCCCAATAGTACACAACTAAGAGTGTGCCTACTCCTGGGGCTCTGTGTTCTAAGACAACAGTACACAGCCCAGGTTGGATGGGGCTTTAGGGATCGTATCTGTAAAGACAGTTGGTTCATTAGAAGTACTTCTTCAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAGTACTTCTTCAGAGGCCTGAAGAAAGACAGTCTGTAAATACTTGTTACACACCACTATCCTGCCTGGCCCCTTCACTGTCCTCTTAAAATGCACTTGTATTGGTACAGTATGAGCTAGGGAAGCCAAAACTATCAAGAGCATGAATCCCTCTAAGGCTCTGAGGCGGCTCTGGAGCTCCATTATTCCTCAAGCCAGTCACATGTCACAGAAAATGGCCAGAACTCACAATAATAAAATCTGAGCAGTGGTCTGAATGACTGGGCTTTCTGGAAGTCCACTAACACGACAGGCTGTGCTTTTTCCAGGAGCTAAACACACAGTTGCAAGTCCCTCAATCTAAGGGAAAGAGGGGGAAGGGCCGCAGACTGTCCTGAAGGCAACGACTGACAGCTTAAGGCTTTGTCTTGCAG
Seq C2 exon
CATACTGCAGCGGTGGTGAGTGCCAAGAGTTACATGTGCCCTGTCTGTGGACGGGCCCTTAGCTCCCCAGGGTCTCTGGGTCGCCACCTCCTAATCCACTCAGAAGATCAGCGGTCTAACTGTGCTGTGTGTGGAGCCCGCTTTACTAGCCATGCTACTTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000262:ENSRNOT00000000279:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(39.0=65.7)
A:
NA
C2:
PF056057=zf-Di19=PD(57.6=60.7),PF116003=CAF-1_p150=PU(3.9=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGAACCTAAATTCTGACCCC
R:
CTGTTGAAAGTAGCATGGCTAGT
Band lengths:
270-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]