GgaINT0023781 @ galGal3
Intron Retention
Gene
ENSGALG00000000817 | ZNF821
Description
NA
Coordinates
chr11:21710890-21712058:+
Coord C1 exon
chr11:21710890-21710994
Coord A exon
chr11:21710995-21711891
Coord C2 exon
chr11:21711892-21712058
Length
897 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACTCTGTGGTTGTTCTGCAGCAC
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTTCCTGCGAGCTTGAATGCTGACTCCATGCTGGGACTGTCAAAGTGTCCCCTCTGCCAGCTGGAGTATGAAAGCAGAGAGCAACTCATTGCTCATGTATACCAG
Seq A exon
GTAAGGGGTGGTTCCAAGTAAGGTGATGTCTGTGGCCTTAAGTGCCTCAGCTGTCCCAAAGTCAGAAACAACCCTGGGTGAGGAGCATGGTGTGACTTTGTTCTAATCTTTGCAGTCACAGAACTGAGCTTCTATCTAGGATGTGATTGACATTTATAGCAGATAGTCCAGAGGGAGGTCTGGGGAAAAAATAAGCAAAGCACCATTCTGCAGATCTGGAGAACACAGCTCCATCCCAAGGCAGTCTATGCAAGCAATTGCAAGCTGAGACCAGGCAGTTACTTCAGATTAAACATGGAAGCAATTCTTACACCATTCAGTGTGATAACCTGATCATTCAGCTCTTTATTCTGTCCCTTTATCATAGTTCCTATGTGTGGAAACAGCTGTTCTTCCTCTGAAACGATTCCAGTATTGCAGTGAGTGTGCTGGGAACTCAGGTTTTGTTGTCAGTACGTCTGTGTCTGCAAAAGAGAGAATAAAGCAGAGCTGAATTGACAACTTAACTGTACCAGCTGATCGTTTCTTGCTACCATCATAGTGAACTTCTCCTCACCAGCAGGCTGCCTACTGTTAGCGTAGTCATGCTTTGTCTAGTAACAGCAGCTCCTCAGATGCATTTCTGAAAACAAGGGTCAGATCTTATGATCTCTTTTGGCCCTACTTGTTTCTCTTGCACTGCAGTGGAGCTGTAGAAAGGTCTCCTCCTTGCTGTTTGACCTGTGACATCCCAAATGTCTTGAGCTAGTCTAGGAGCCATCGGCTGGAGAATTTACTGGTTAAGTGATCCAGTTCCAAGTGGTTGAACTAGATAGTTTGCCATATTCATTGAGTACACCTCAGACTGGGCAGGAAGCTGGCCAATTTGTAACTAACAACTCTGTGGTTGTTCTGCAG
Seq C2 exon
CACACTGCAGCTGTGGTGAGTGCCAAGAGCTATATGTGTCCTGTATGTGGAAGAGCCCTCAGTTCACCAGGTTCCCTTGGACGACACCTCCTGATCCACTCAGAGGACCAGCTGTCAAACTGTGCAGTGTGTGGAGCACGCTTCACCAGCCACGCCACATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817:ENSGALT00000001191:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(27.3=60.0),PF127732=DZR=PU(26.6=60.0)
A:
NA
C2:
PF056057=zf-Di19=PD(70.1=96.4),PF127732=DZR=FE(69.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCGAGCTTGAATGCTG
R:
CTGTTGAATGTGGCGTGGCT
Band lengths:
271-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]