BtaINT0166409 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039512 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr25:37343014-37345332:-
Coord C1 exon
chr25:37345206-37345332
Coord A exon
chr25:37343847-37345205
Coord C2 exon
chr25:37343014-37343846
Length
1359 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTATCTCCTTTGTCCTGTAGGCC
3' ss Score
9.33
Exon sequences
Seq C1 exon
GGGTTGGGCCCATTTAAAGACATGGCCCTGGCTTTCCCTGAGGAGGAGTGGAGGCACGTAACCCCAGCCCAGATAGACTGCTTTGGGGAGTATGTGGAACCCCAGGACTGCGGGGTCTCACCTCCAG
Seq A exon
GTAAGACATCAGAAATGCTGGCTGTCTCCTCTGTATTTTGTCAAATCAGGAAGCATTAAGTGTCCTTTTTCCTTTTCTCTTTTAATGGCCTTGCCTGAAAGGACTTTCCCGTTGAAGCGTGACTTGTCATTTTCCTCTTTTCTTGGCTTCTTTGCTCCCTAGTATCTCTCTCCTCTCTTCTTTTCCTTTTCTTCTTGATCTTATGTAACCAATTATTCTGTTAATTTAGAGAGAGTAAAAGAGGAAACAAAGGAAGGACCTGTGGAAGAGCGTTTCATTCCTAATAAATGTGCTGATGTCGAGGTGGCTTGGTACAGACAGCTGCGTTCACTGGCCCATCCAGCAGTCATGAAGCATCTGTCCTGAGTCAGTCCCTGTGCCAGGCTCCCAGAGACCCAGGGCAATAAACCAGGCTGAGGTGGAGGGCACAGTGGGAGCAGGGACAGTGACCTGAGGGAGGATGTGGAAACATTGCTGGAACAGGTTCATGATCCTAGGGAAGCTGAACATCTCGACGACTGTAGAATAGCATGTGTAACAAGGTCATGTGTAAGTAAGTGTGGAATAAACAGTGCTAATTGAATGCATGTGCTGTAGAGACCCACAGCGGGGGAGAAATCAAGGTGTGTTCCTTAGAGGATGGCATTGAGTCAGATTTTGAAGGAAAGCACAGGGTGACTTAGTAGGAAATTAAGAGGGAAGGCATTGTAATTTAGCAGATGGTTCCGTGAGAAGGCAGGAAGATGGTCTGAGCTTGGGCTACTGTCACAAAATACCACCAAGTGGGTGGCTTTAACAACAGACACTTAATATCTCCCAGTTCCGGAGGCTGGGAAGTCCCGGATCCAGTTGCTGGCACATTTGTTGTCTGGTGAGGGCCTCTCTTCCTGGTTCACGGGCAGTTGCCTTCTTGCCAGTCCTCATGTGGCAGAGGGAGGGAGAGAGAGATCTCATGTTTCTTCCTCCTTTTTTGTAAGGCCGTTAATCCATCACGAGGGCTCCCACTCACATGACCCCTGTGTGCAGAGAGCCAGCCCTGGCTTCTGCTCTTCTGGGACGTGGTCCCATCCTGGGGGCTCCACCCCCAGACCCTCACCTAATTAGGGTCCAAAGGCCCCACCTCCTAACAGCAGCCCCAGGGGCCTGAGAGCTTCAGCCTGTGAATTTTGGAGGGAACCCAAACATTCAGTCCATAACAGGTGGAAAGAAGTAAAGGAATGTCTGGTTTTAGAGTCAGAGCAAGTGAAATGCACAGAGGTCATTGGTAGTTGTTAATGGGACACGTTAGAAGCCAGGTTCTGGCTAGAAGTTTCCCTTCAGATCTCTTCAGCGTTGGTCTGTATCTCCTTTGTCCTGTAG
Seq C2 exon
GCCTGGGGAGCAAGGACAAGGAGGCAAAGACCCAGCTGGCAGACCCCAAGGGGCAGCTCGCTTGCGGGCGGGCAGAGAGGTGTGGGGAGGCCGCTCTCCAGGGCCCGGAGTCGGGAAGACCAAGCGAGCAGCAGGCCGGGAGCTCGGTGGGAAACGCGCCCGGGCCGCTCCTGCCCCAGCACAGCGTTGCCCCGCTGCCCGATGACCTCCAGACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGGAAAGGCTTCAGTCGGAGCTCCAACCTGGTCCGACACCAGCGGACGCACGAGGAGGAGAAGTCGTACAGCTGCGGGGAGTGCGGCAAGGGCTTTGCGCTGCGCGAGTACCTGCTGAAGCACCAGCGGACGCACCTGGGCCGGCGGCCGCACGTGTGCAGTGAGTGCTGGAAGACCTTCAGCCAGCGCCACCACCTCGCGGTCCACCAGCGCAGCCACACAGGCGAGAAGCCCTTCCAGTGCGCGGACTGCTGGAGGAGCTTCAGCCGCCGGCAGCACCTGCAGGTGCACCGCCGGACACACACCGGCGAGAAGCCGTACACCTGCGAGTGTGGCAAGCGCTTCAGCAGGAACGCCAACCTGGCGGTGCACCGGCGGACCCACACGGGCGAGAAGCCCTATGGCTGCCAGGTGTGCGGGAAGCGCTTCAGCAAGGGGGAGCGGCTGGTCCGGCACCAGAGGATCCACACCGGGGAGAAGCCGTATCGCTGCCCGGCCTGCGGCCGCAGCTTCAACCAGCGCTCCATCCTCAACCGGCACCAGAAGACGCAGCACCGCCAGGAGCCCCCGGGTCAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039512:ENSBTAT00000061261:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=NA C2=0.372
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=69.8)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAACCCCAGCCCAGATAGA
R:
GAGCTCCGACTGAAGCCTTTC
Band lengths:
348-1707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]