HsaINT0187423 @ hg38
Intron Retention
Gene
ENSG00000197037 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr7:99624057-99632407:+
Coord C1 exon
chr7:99624057-99624180
Coord A exon
chr7:99624181-99629190
Coord C2 exon
chr7:99629191-99632407
Length
5010 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATCTCCTCCTGTCCTGTAGGCG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GGGTTGGGGCCATTTAAAGATATGGCCCTGGCCTTCCCTGAGGAGGAGTGGAGGCATGTGACCCCAGCCCAGATAGACTGCTTTGGGGAGTATGTGGAACCGCAGGACTGCAGGGTCTCTCCAG
Seq A exon
GTAAGACTGTCTCCACCCACAGGTGAGGAACTGGGGAGTTCTGAAAGCTCAGGTCAGGGGTCCTGCCGTAGCTCTGGCGCTCCTGGCAAAGGAAGGGGACTTCATGGCAGGCGGGTAAATGGGTCCAGCACGGACCATGGGGCACGAGGAGCTGCTTTCCTGTGTCAATAGAGGAGCCAAATGATGGAGCAGGAAAACATGAGGCCATTATTCTGGCTGTATGGAGACAGGTCGGTCATGAGGACCCCCAAACACCTACATTGTGTCCATGATTAAAGACACTGAGGGCTTGAGAACAAGATACGAACAGCAAAAGATGGGGCATCTGAGCTTGTTCAGATATTTATTGAGTGCTCCCTGCATGTGGGCCCTGTGTTAGTGGTTTTCTCTTGCGGCAGGAAGTGGGCAGGACTAACGTGCACGAAAGCGTTGGAGCTCACGGTGTGCACGTAGGAGGGCACGAGGGGGCTTCGCGATGGGAGAGGTTGGAGTGGCCCGAGTCACAGAGGAAGCAGAGCTGCGCTGGGACTCAGGTGGTGGCTGGGTTTGACCTGGGCTCAGAGCCTGGGGGGATGCGGCCATTGTGTGTGACAGCAGCTCATGGGAGGAGGAGCAGCGAGAGAGAGCCCACAGGGGCTGCCAGCAGAGCGCACTGCGGGGCTTTGGGGCTGCCAGGGCAAGGGACAGTATGGAGAGTCTGCATGCGTGGAATCAGGATGCCGGCGGGGAGAGGAAACACTGTGGCTGGAGCGGCCTGTCCTTGTTCTTTGATTTTCTTCTTTTTTGTTTCATAACTTCTTTGTGAGTTGTACACTGACCACCCATCTGTACCGACCCCACCTAGCCTTTCCTTATCCTGAAATGCCTTGAAGGAAGAGCAAGATTATCCCTGTGCTTCCTTCAGGACGTAAGAGAATCCATCCTGCCCCTCCACTTGCTGACCCTGACCTTGAGCATCTCCCTTGAGCTTTCCAGGTCTCAGTTTCCTCTGTTGTGGAATGGGGCTGTTCATGGAACCTGTCCTCATGGTGCCATGAGGATGAAGGGAGGTGACATATCTAAATGTGTGGTGACCATGGTAGTGTTAGATTGTTTAGTTAGTGCTGTAAGTATTACTAAGGGATTCTTGTAGGAGCCCTCAGCCTTCACTCATTTATTCACCACAGAGGTGGACTTGGCTCTGTGGCCATTGCTGTTCTGGTCACTATGAAGAGTTAAAAATAAAGGCGCTTGCCTGTGGGGTCTTAGAGTTCAGGGGAAGAGGCCATGTGCATGTAATAGTGGGATACGGTAAGGGGCACTGGTCTCCTGGGAGACCTGGGTCCAGGGCACGGTTGACACAGTGTGGCAGTGATGCAAGTGGCAGAAAGATGTCAGCATACTTTATGTGGAGATGTGTGATTGCTGTAACGGCAGAGGATGACAGAACAAAGCAGGGGCTCGAGTGATGAGCCCCAGACAAAGGTGCCAGTGTCCTGGTGCCAGGGTCCCCCTCAGGGATATTCCCCTCCCAGTGATGCTGCTGTGTGGGGTGAGGAGCCCCTCGCCCCCATTCTCAGAAGATTTTCATGCTCTCCTGGCCATTTCTGACTGTTCTGGAGACTGGTTCTGTCCTTGTCCCCTCACCAGCTCAGTGTCTCAGAACTCAGAGCAACTCAAGCCCATACCTGAACATTTCTGCCGCCAGGTGACACGAAGGCCTGTTTCCCAAGTGTACCATTCACTTGCTGTCCCAGCTTTCAGGTCTTCCTGGGATTCACACTCGGGTTGTCCTGGTGCTTGTACTGACAGCTGCTTGGGGCTGGGCCTGAGCTGCTTCACCTGTAAAGAGACTGAATGCACAGGGCAGGGTTGAGCTAGGTGGCTGCCCAGATCACTTCCAGTTGTTCGTCTGTTCTCATTAGCAGACGGTGAGGTGCAGACCTTGTTGTCTGGGTTGTAATTGCAGTAATGTCCACAAGGACTGGAGCAAGAACTCACAACAGGATTTGGAATCACAGAGGCAAAAAGTAGCAGGTGCAGAAACCTGAATGCAGGACTCTGCAGGCTGGTTCCCAGGATGGTGAGGGTCCTGGAGTGAAAGATGAGTGCTCAGAGGAGTAAGGAGGAGGCAGGAGTGAGTAGAGTGAGGCCGCTGAGGAGTCCGTGAGGACTCTGGGTCCTTGTTTAAAAATTTTTTCTGCGCAGAGTAATGTGATGGAGGTTTTACTTGAGGAAAATTGGATTGACGGCAGGGTACGGCCAGTCTGGAGGGTTGAAATAGTGTAGGCACTGGGGTAAGAGCAGGAACCAGGCCAGTGGTCATGTAGAAGGGGGTTTACTGAAATATGCTTCCAAGGATGGGCCACAGATTGGCCAGAGGGGAGGAAAGAGAAGAGTCAGAGAGGAGTCTACGTCTTAGGATCCTGGCTAAGGGCCTGGAAAAATTATGTTACTACTGTCAGAAAGAGAGGGAAGCATTTTCCTAAGAGGGAGGAAGAATGGAAAGTTCCATTTGTTGACTTTGAGATCTAAGTGGATGGTCCCTGGAAGTAGCTGCAAGTCAGGTACATGGTCTGGGAGTTAAAATAATATCATGAACCATTGCATTCCTGCTCCATGTGTGCAGTAAACTTCATGAGTGTACAATCCATTTTGAAGGTGGTGAATGTAAGGCTCAGAGAGGTTAATTGATTTTCCCATGATCACACAGCAATTGAGCAGCCAGTGCAGCACTCAAAACGGGTTTCTCACTGCTAGGTCCCTTCTCTTCCACTACTGTGTCTTTCTCCCAGTGTCTCTGTTTATACTTAGGTATCATTGTATTTATTTTTCCCCCAGCTTTATATTTTGAACTCTTATTATACAAATTTTCAAACATACAGAAAAGCTAAGACTAGTACAGGGAACACACTTAGGTCTTTATCTACATTCACCAATTGTTAACATTTGCCATATTTAGCTGTATAATGTGTGTTTTGTTTTGGAATGATATGGAAGTTGGAGGCATCTCAATCTTTCATTTGTAAATACTTCAGCATTTGTCTAACAATGACATTCCCAACATAGCCCAGTAGCATAATTTCATCTAAGAAAATAAACATAAATTCGATATATGTAACATCTAGTGCATAGTCAGCTTTCCCCAAGATCTAGTTGTGGTTTGTGCATTGCATTTAGTTTTAATCTTACTATTCATAACACCTCAAAACTGAAAACTACCCAAATGAACAACAGTCAAATTAATAAGTAGGTTGCAGTCTATCTGTATCTGTATATCTATCTATATATACATACACACACACACATACATATACTCAGTGGAATACTGTATACCAATGAAAAAGAATAAACTACAGCTTCACACCATGATATAGGTGAACGTCACAAACATGATATTGAGTAGAAGAAGCCAGAAACAATGTGTGAGACAATTACCTGAAGTTCAAGAACAGGCAAAAAAGTCCAGACAATGTGTTCCCGTTGGTATAGTATATATGTATACTATATACGTATATCATGTATATGCTGTATACGTATATCTCGTATATGCTGTATACGTATATCTCGTATATGCTGTATACGTATATCGTATATGCTGTATACGTATATCTCGTATATGCTGTATATGTATATTGTATATACTGTATACATGTATATGCTGTATATGTATATACTGTATATGTATAGTATATATATGCAGGGTATAGTGATGGAGGAGATGTAAAAGGGGCTTCTAGGGACTGGTTATGTTCTGTTTGTTGAACTGAATGCTGTTTACGTGGTTGGGTTCGTTAAGAAAATTCTTTGCATAGTGTGTGGTGACGCACACCTGTAATCCCAGCACTCAGTGAGGCAGAGGCAGGAGGGTCACTTGAGCCCAGGAATTCGAGACCAGCCTGGGCAACATAGTGAGGCCCCCATCTCCACAAAAAGGAAAAAAAGGGTAACGTGACATTTTTTAGCCAGCGCTGGATCCAAAAAAATAAAAATAAAATCTTTGCGTGTACAAAACATAAATGGCTTGTACACTTTTATTTTCATGAAAAGTTTACAAAACAAAATCCAAGCTGATAAGTATGTATTTCATATTTTATCAAACCAGGAGGCATATACTGTCAGGTTTTTTTTGTCTTCTAGTCATCTTGCCTAAAAGGACTCTTCCGCTTTAAGCACCACTTATTTCTCCTTTTCTTTTTTTCTCTTTGCCTCTTTGTTCCCCAATACCTTTTCTTTTCTTTTTTTCTCCTCCCCTTTCTGTTACTCTTCCATAAACACCTGTTCCGTTAATTTAGAGAGAATATAAGAAGGATCAGAGTGAGGATGAAGGAAGGGTGAAGCTGAGCATTTCAGCAGCGTCATGGTCTCAGTCCTGATAAATATGCTACCTAGGGGCGTTCTCCTGCAGGAGCCTCAGTGAAGCCTGCTTCATTCATTCAGCCAGCAGTTAGCAAGCATCTTCCCTGAGTCAGTCCCCTGCCAGGCTCCTAGGAGACCCAGATGAATGAACCTGGTTAGGCAGAGGGAGCATGTGGGCAGGACAGGGGACTGAGCAGGCACCTGGAAGGTCTGGAGAGCTGTGTGCTGCCCTGTGCTACAGCAGGTGTAGAATCGTTTGGGGAAGGCGCAGGACATCTGGATGAATGGAAACAGCATTTCCAACAAAGTCACATGTAAATAGGTACAGAATAATAAAGTGCTAGTTAGGTGCACAGTGCTGAAGAGGCCCAGAGTAAGAGAATAATCGTGGTGAGTGTCTTAGAGGAAATTATTGAGCTACATTTTGTAAGAAGTAAAGGTCTAGATTAGCAGCAAGATAAGTGGGCGGGCACTGGAATTTGGCAGACTATTCTGTAAAAAGACATGGAGGTGGAAATAAGGAAAAAGAAGTAAGGAAAGCCTGAGTTGAGGTTGTTGGTCAAAGGAAAAAAGAGAAGGAACCATGAATGGGACCCCTGTGAAGCAGAGTTCTAACATGTAAATGTCCTGCGGCTACCACAGAATCAATCTTTATCTCCTCCTGTCCTGTAG
Seq C2 exon
GCGGTGGGAGCAAGGAAAAGGAGGCAAAACCCCCACAGGAAGACCTGAAAGGGGCGCTGGTGGCACTGACATCAGAGAGGTTTGGGGAAGCCTCTCTCCAGGGCCCTGGGCTCGGAAGGGTCTGTGAGCAGGAGCCTGGTGGCCCTGCAGGCAGTGCGCCTGGGCTTCCTCCTCCCCAGCACGGTGCCATCCCCCTGCCTGACGAAGTCAAAACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGGAAAGGATTCAGTCGGAGCTCCAATCTCGTCAGGCACCAGCGAACCCACGAAGAGAAGTCTTATGGCTGTGTGGAGTGTGGGAAGGGCTTTACCCTGAGAGAATACCTGATGAAGCACCAGAGAACCCACCTGGGAAAGAGGCCCTACGTGTGCAGCGAGTGCTGGAAAACCTTCAGCCAGAGACACCACCTGGAGGTGCACCAGCGCAGCCACACTGGGGAGAAGCCCTACAAGTGCGGGGACTGCTGGAAGAGCTTCAGCCGCAGGCAGCACCTGCAGGTGCACCGGAGGACGCACACCGGGGAGAAGCCCTACACCTGCGAGTGTGGCAAGAGCTTCAGCAGGAATGCCAATCTGGCGGTGCACCGGCGTGCCCACACTGGCGAGAAGCCATATGGGTGCCAGGTGTGCGGGAAGCGGTTCAGCAAAGGGGAGCGGCTGGTCCGACACCAGAGAATCCATACAGGGGAGAAGCCCTACCACTGTCCTGCCTGCGGGCGAAGCTTCAACCAGAGGTCCATCCTCAACCGGCACCAGAAGACCCAGCACCGCCAGGAGCCGCTGGTGCAGTGAGCATAGCAGGTGGCAGGCAGCACCATCATTCATCTTTCTCACTGCAGGGCCTTGCGGGGTGCAAGGTGATGGCTGCAGGAAAGCACTGGTCCCATCGCCTTCCCACCCATTCGCCAACGCGGGAAAGGCAAGGCCTGGCTTACTTAGAGCTTCCAGAGAGCATAGCTGCTTCCATCTCTTACCCAAGTGGTGCTAAACAATTTTTCTTCCAATGTTTGAGGGAAGCAGTCTCCTGCGGTTCAGTTCAGGCTGAGATTTTCTCCTTCAGTGGACTGTCTGTGTCCCCCTGCCGAACAAAGCTGGGAGTAAAGGCAAAACCTTGACACGTGTTGGTAGCTGGGACCTCATCTTCCTGAGGGCTCTGTCTTGCCTGCAGGGTCATAGCTCAGACTCTTCCCCCACCCCCTCTCTTTTCCATTGAACAAACATTTATTGAACATCCTCTGAGCACCTGGCCGTGGGAATGCCGTGGTGAATGAGAGACTAGACGTGATGCCTCTGGGGGTTGTGCGTTGGGGATGCATGCGACAGCCCATGACCCGAGGCATTCTCAGGGTATCTGTGCTGTGTGCCCGTGAGAACATCTTCCCATGACCACTCCTGCCCTCCTGCCCCGTGCTGGATCTTCCCTCCCCAGCTGGGATCTGCTCCCAGGCAACTGTGTGAATTTTACATTATTTGGAGCCTCATCTGTGTCAGGCTATAACATTCTATCCTCATCTGTAAAACTTCCCCGTCCATTATTCCTTGCACTATAACAACTGTCAACACACCAACTATTAGGAAGTTAGTATTTTGCTATTGATCACTGAATAAACATCAGAGTATTTTAAAAAACAGTTCTCTAGAAAGAACTGTTATAATTAAAATGAGTCTGAAAGATGAACTCTAGTATTAATGCCCTATATTTGATGGCACTTTATAGTTCATAAAATTAATTTCACCCCATTCTCATTGGACCCATTTCCCAAGTATTTATTGAGGCCCTGTAACAAACATGTCAGGAACTCTTCTGGGTGCTTGAGACACATCCATGAATAAAATAGGGGGAGAAGCTGTTGACCTCGTAGAGCTTATGTCTCGTGGATGTACCTGATCTTCAGAACCCGTGGATATTCCTGCAAATCCTCTGGGCCTGTATTCATTGCTTTGTCAGCATCTTGCCCTGAAATGCATTTGTCACCTACCTCTTGTTACTAAATGGTCTCTGCCCTCCAGACCCTTGTCATCCAAGGCACTAGGGGTCCTGGACACCCACTGGGGATGATGAGCTGGTAGCGACCTGTTTTGCATGAGTGCCAAGTCAGGAAAAATAAAGATATTTGTAGGCATTAAAAAAAAATACATTTCTTTAAAAATGAGAAGATGCAATATTTGTAAACTGTTGAAGCTTCCTTATTGTGCCATCACTTAAGGGTTTCATTTCTGTTTAAAGTTCTGGAAGCTGCATAACTAGCGTGGACTGACTGCTGTGTCATTGTGCTGTGCCTTTGAACCCTGGCTGAGTGAGTGAGTTTGTCCTTTGTTGATAGTGTCCTATAATTGCAAAATGTGGTTTGTCTTCTGATGCCTCTTAATACCAGATTCTTTTACTGAGATTTTTTTTTTTCATTTTCCATTGTAAATAAGGTAAATGGTAATGACTAACACAAAGCTGTATTACTCAGCCCACTTTGAAACGTGGTTTTATCACCTGTTCTTGTTAGGCAGCATGGTGTCTAATTTTGGCTTAGCAAATGACGCTCCTTGGTCTTCCTGGCTCATTAGCTGTGCCCACGAGGCTGCACTGACTGGGTCGTAAATGTATCTGAGATGTCCACACGGGGCTGCTGCTGCTCCTCTGTAATACTGAGGTCCACATGCAAAATCAGCTTTTTTTCCCCCGTAATTATCAGAGCAGCTAGGCAGGGCTGACAGCCAGGCAGACTCAGTGGGAGGCTTCTGGCCTGAGTGTGGCCTTCCCCAGAGGGTGGTTTTCCAAAGGCAGGTGGGGACTGGGGAGGCCTCGGGGGGCTGCTTGTCATTACCTGAATCACAGATGCTCTTTTGTCATACACAGCCAGCATTCCTCTGGGTTTCAGCAAGTTGGCATATCTTAAGCTTCAGAAGGAGCTGGGCCTTGCTGACTTTCCTATCTGGCCTCTTCCCTATCTCCTGTGGGGCCAAGAGCTTAGGACAGTGTCTCAGAAAAGCCTCTAAGTAGGGGGTTTTTCCCATGGGATTGTGGTAGTCTGATTTTTCATATCTATTCAAATGTTAAGAAATATTTTGTTTTCTGTATTTTTCTATTCTTTAGAAATTTTTTTATAATAGATAATTTCAAACCTATATAAATAAATCCTTATGTATTTATCATTTGACTTTATTATAAACTCATAATCAATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037:ENST00000394152:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains