HsaINT0187423 @ hg19
Intron Retention
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99221680-99230030:+
Coord C1 exon
chr7:99221680-99221803
Coord A exon
chr7:99221804-99226813
Coord C2 exon
chr7:99226814-99230030
Length
5010 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATCTCCTCCTGTCCTGTAGGCG
3' ss Score
9.72
Exon sequences
Seq C1 exon
GGGTTGGGGCCATTTAAAGATATGGCCCTGGCCTTCCCTGAGGAGGAGTGGAGGCATGTGACCCCAGCCCAGATAGACTGCTTTGGGGAGTATGTGGAACCGCAGGACTGCAGGGTCTCTCCAG
Seq A exon
GTAAGACTGTCTCCACCCACAGGTGAGGAACTGGGGAGTTCTGAAAGCTCAGGTCAGGGGTCCTGCCGTAGCTCTGGCGCTCCTGGCAAAGGAAGGGGACTTCATGGCAGGCGGGTAAATGGGTCCAGCACGGACCATGGGGCACGAGGAGCTGCTTTCCTGTGTCAATAGAGGAGCCAAATGATGGAGCAGGAAAACATGAGGCCATTATTCTGGCTGTATGGAGACAGGTCGGTCATGAGGACCCCCAAACACCTACATTGTGTCCATGATTAAAGACACTGAGGGCTTGAGAACAAGATACGAACAGCAAAAGATGGGGCATCTGAGCTTGTTCAGATATTTATTGAGTGCTCCCTGCATGTGGGCCCTGTGTTAGTGGTTTTCTCTTGCGGCAGGAAGTGGGCAGGACTAACGTGCACGAAAGCGTTGGAGCTCACGGTGTGCACGTAGGAGGGCACGAGGGGGCTTCGCGATGGGAGAGGTTGGAGTGGCCCGAGTCACAGAGGAAGCAGAGCTGCGCTGGGACTCAGGTGGTGGCTGGGTTTGACCTGGGCTCAGAGCCTGGGGGGATGCGGCCATTGTGTGTGACAGCAGCTCATGGGAGGAGGAGCAGCGAGAGAGAGCCCACAGGGGCTGCCAGCAGAGCGCACTGCGGGGCTTTGGGGCTGCCAGGGCAAGGGACAGTATGGAGAGTCTGCATGCGTGGAATCAGGATGCCGGCGGGGAGAGGAAACACTGTGGCTGGAGCGGCCTGTCCTTGTTCTTTGATTTTCTTCTTTTTTGTTTCATAACTTCTTTGTGAGTTGTACACTGACCACCCATCTGTACCGACCCCACCTAGCCTTTCCTTATCCTGAAATGCCTTGAAGGAAGAGCAAGATTATCCCTGTGCTTCCTTCAGGACGTAAGAGAATCCATCCTGCCCCTCCACTTGCTGACCCTGACCTTGAGCATCTCCCTTGAGCTTTCCAGGTCTCAGTTTCCTCTGTTGTGGAATGGGGCTGTTCATGGAACCTGTCCTCATGGTGCCATGAGGATGAAGGGAGGTGACATATCTAAATGTGTGGTGACCATGGTAGTGTTAGATTGTTTAGTTAGTGCTGTAAGTATTACTAAGGGATTCTTGTAGGAGCCCTCAGCCTTCACTCATTTATTCACCACAGAGGTGGACTTGGCTCTGTGGCCATTGCTGTTCTGGTCACTATGAAGAGTTAAAAATAAAGGCGCTTGCCTGTGGGGTCTTAGAGTTCAGGGGAAGAGGCCATGTGCATGTAATAGTGGGATACGGTAAGGGGCACTGGTCTCCTGGGAGACCTGGGTCCAGGGCACGGTTGACACAGTGTGGCAGTGATGCAAGTGGCAGAAAGATGTCAGCATACTTTATGTGGAGATGTGTGATTGCTGTAACGGCAGAGGATGACAGAACAAAGCAGGGGCTCGAGTGATGAGCCCCAGACAAAGGTGCCAGTGTCCTGGTGCCAGGGTCCCCCTCAGGGATATTCCCCTCCCAGTGATGCTGCTGTGTGGGGTGAGGAGCCCCTCGCCCCCATTCTCAGAAGATTTTCATGCTCTCCTGGCCATTTCTGACTGTTCTGGAGACTGGTTCTGTCCTTGTCCCCTCACCAGCTCAGTGTCTCAGAACTCAGAGCAACTCAAGCCCATACCTGAACATTTCTGCCGCCAGGTGACACGAAGGCCTGTTTCCCAAGTGTACCATTCACTTGCTGTCCCAGCTTTCAGGTCTTCCTGGGATTCACACTCGGGTTGTCCTGGTGCTTGTACTGACAGCTGCTTGGGGCTGGGCCTGAGCTGCTTCACCTGTAAAGAGACTGAATGCACAGGGCAGGGTTGAGCTAGGTGGCTGCCCAGATCACTTCCAGTTGTTCGTCTGTTCTCATTAGCAGACGGTGAGGTGCAGACCTTGTTGTCTGGGTTGTAATTGCAGTAATGTCCACAAGGACTGGAGCAAGAACTCACAACAGGATTTGGAATCACAGAGGCAAAAAGTAGCAGGTGCAGAAACCTGAATGCAGGACTCTGCAGGCTGGTTCCCAGGATGGTGAGGGTCCTGGAGTGAAAGATGAGTGCTCAGAGGAGTAAGGAGGAGGCAGGAGTGAGTAGAGTGAGGCCGCTGAGGAGTCCGTGAGGACTCTGGGTCCTTGTTTAAAAATTTTTTCTGCGCAGAGTAATGTGATGGAGGTTTTACTTGAGGAAAATTGGATTGACGGCAGGGTACGGCCAGTCTGGAGGGTTGAAATAGTGTAGGCACTGGGGTAAGAGCAGGAACCAGGCCAGTGGTCATGTAGAAGGGGGTTTACTGAAATATGCTTCCAAGGATGGGCCACAGATTGGCCAGAGGGGAGGAAAGAGAAGAGTCAGAGAGGAGTCTACGTCTTAGGATCCTGGCTAAGGGCCTGGAAAAATTATGTTACTACTGTCAGAAAGAGAGGGAAGCATTTTCCTAAGAGGGAGGAAGAATGGAAAGTTCCATTTGTTGACTTTGAGATCTAAGTGGATGGTCCCTGGAAGTAGCTGCAAGTCAGGTACATGGTCTGGGAGTTAAAATAATATCATGAACCATTGCATTCCTGCTCCATGTGTGCAGTAAACTTCATGAGTGTACAATCCATTTTGAAGGTGGTGAATGTAAGGCTCAGAGAGGTTAATTGATTTTCCCATGATCACACAGCAATTGAGCAGCCAGTGCAGCACTCAAAACGGGTTTCTCACTGCTAGGTCCCTTCTCTTCCACTACTGTGTCTTTCTCCCAGTGTCTCTGTTTATACTTAGGTATCATTGTATTTATTTTTCCCCCAGCTTTATATTTTGAACTCTTATTATACAAATTTTCAAACATACAGAAAAGCTAAGACTAGTACAGGGAACACACTTAGGTCTTTATCTACATTCACCAATTGTTAACATTTGCCATATTTAGCTGTATAATGTGTGTTTTGTTTTGGAATGATATGGAAGTTGGAGGCATCTCAATCTTTCATTTGTAAATACTTCAGCATTTGTCTAACAATGACATTCCCAACATAGCCCAGTAGCATAATTTCATCTAAGAAAATAAACATAAATTCGATATATGTAACATCTAGTGCATAGTCAGCTTTCCCCAAGATCTAGTTGTGGTTTGTGCATTGCATTTAGTTTTAATCTTACTATTCATAACACCTCAAAACTGAAAACTACCCAAATGAACAACAGTCAAATTAATAAGTAGGTTGCAGTCTATCTGTATCTGTATATCTATCTATATATACATACACACACACACATACATATACTCAGTGGAATACTGTATACCAATGAAAAAGAATAAACTACAGCTTCACACCATGATATAGGTGAACGTCACAAACATGATATTGAGTAGAAGAAGCCAGAAACAATGTGTGAGACAATTACCTGAAGTTCAAGAACAGGCAAAAAAGTCCAGACAATGTGTTCCCGTTGGTATAGTATATATGTATACTATATACGTATATCATGTATATGCTGTATACGTATATCTCGTATATGCTGTATACGTATATCTCGTATATGCTGTATACGTATATCGTATATGCTGTATACGTATATCTCGTATATGCTGTATATGTATATTGTATATACTGTATACATGTATATGCTGTATATGTATATACTGTATATGTATAGTATATATATGCAGGGTATAGTGATGGAGGAGATGTAAAAGGGGCTTCTAGGGACTGGTTATGTTCTGTTTGTTGAACTGAATGCTGTTTACGTGGTTGGGTTCGTTAAGAAAATTCTTTGCATAGTGTGTGGTGACGCACACCTGTAATCCCAGCACTCAGTGAGGCAGAGGCAGGAGGGTCACTTGAGCCCAGGAATTCGAGACCAGCCTGGGCAACATAGTGAGGCCCCCATCTCCACAAAAAGGAAAAAAAGGGTAACGTGACATTTTTTAGCCAGCGCTGGATCCAAAAAAATAAAAATAAAATCTTTGCGTGTACAAAACATAAATGGCTTGTACACTTTTATTTTCATGAAAAGTTTACAAAACAAAATCCAAGCTGATAAGTATGTATTTCATATTTTATCAAACCAGGAGGCATATACTGTCAGGTTTTTTTTGTCTTCTAGTCATCTTGCCTAAAAGGACTCTTCCGCTTTAAGCACCACTTATTTCTCCTTTTCTTTTTTTCTCTTTGCCTCTTTGTTCCCCAATACCTTTTCTTTTCTTTTTTTCTCCTCCCCTTTCTGTTACTCTTCCATAAACACCTGTTCCGTTAATTTAGAGAGAATATAAGAAGGATCAGAGTGAGGATGAAGGAAGGGTGAAGCTGAGCATTTCAGCAGCGTCATGGTCTCAGTCCTGATAAATATGCTACCTAGGGGCGTTCTCCTGCAGGAGCCTCAGTGAAGCCTGCTTCATTCATTCAGCCAGCAGTTAGCAAGCATCTTCCCTGAGTCAGTCCCCTGCCAGGCTCCTAGGAGACCCAGATGAATGAACCTGGTTAGGCAGAGGGAGCATGTGGGCAGGACAGGGGACTGAGCAGGCACCTGGAAGGTCTGGAGAGCTGTGTGCTGCCCTGTGCTACAGCAGGTGTAGAATCGTTTGGGGAAGGCGCAGGACATCTGGATGAATGGAAACAGCATTTCCAACAAAGTCACATGTAAATAGGTACAGAATAATAAAGTGCTAGTTAGGTGCACAGTGCTGAAGAGGCCCAGAGTAAGAGAATAATCGTGGTGAGTGTCTTAGAGGAAATTATTGAGCTACATTTTGTAAGAAGTAAAGGTCTAGATTAGCAGCAAGATAAGTGGGCGGGCACTGGAATTTGGCAGACTATTCTGTAAAAAGACATGGAGGTGGAAATAAGGAAAAAGAAGTAAGGAAAGCCTGAGTTGAGGTTGTTGGTCAAAGGAAAAAAGAGAAGGAACCATGAATGGGACCCCTGTGAAGCAGAGTTCTAACATGTAAATGTCCTGCGGCTACCACAGAATCAATCTTTATCTCCTCCTGTCCTGTAG
Seq C2 exon
GCGGTGGGAGCAAGGAAAAGGAGGCAAAACCCCCACAGGAAGACCTGAAAGGGGCGCTGGTGGCACTGACATCAGAGAGGTTTGGGGAAGCCTCTCTCCAGGGCCCTGGGCTCGGAAGGGTCTGTGAGCAGGAGCCTGGTGGCCCTGCAGGCAGTGCGCCTGGGCTTCCTCCTCCCCAGCACGGTGCCATCCCCCTGCCTGACGAAGTCAAAACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGGAAAGGATTCAGTCGGAGCTCCAATCTCGTCAGGCACCAGCGAACCCACGAAGAGAAGTCTTATGGCTGTGTGGAGTGTGGGAAGGGCTTTACCCTGAGAGAATACCTGATGAAGCACCAGAGAACCCACCTGGGAAAGAGGCCCTACGTGTGCAGCGAGTGCTGGAAAACCTTCAGCCAGAGACACCACCTGGAGGTGCACCAGCGCAGCCACACTGGGGAGAAGCCCTACAAGTGCGGGGACTGCTGGAAGAGCTTCAGCCGCAGGCAGCACCTGCAGGTGCACCGGAGGACGCACACCGGGGAGAAGCCCTACACCTGCGAGTGTGGCAAGAGCTTCAGCAGGAATGCCAATCTGGCGGTGCACCGGCGTGCCCACACTGGCGAGAAGCCATATGGGTGCCAGGTGTGCGGGAAGCGGTTCAGCAAAGGGGAGCGGCTGGTCCGACACCAGAGAATCCATACAGGGGAGAAGCCCTACCACTGTCCTGCCTGCGGGCGAAGCTTCAACCAGAGGTCCATCCTCAACCGGCACCAGAAGACCCAGCACCGCCAGGAGCCGCTGGTGCAGTGAGCATAGCAGGTGGCAGGCAGCACCATCATTCATCTTTCTCACTGCAGGGCCTTGCGGGGTGCAAGGTGATGGCTGCAGGAAAGCACTGGTCCCATCGCCTTCCCACCCATTCGCCAACGCGGGAAAGGCAAGGCCTGGCTTACTTAGAGCTTCCAGAGAGCATAGCTGCTTCCATCTCTTACCCAAGTGGTGCTAAACAATTTTTCTTCCAATGTTTGAGGGAAGCAGTCTCCTGCGGTTCAGTTCAGGCTGAGATTTTCTCCTTCAGTGGACTGTCTGTGTCCCCCTGCCGAACAAAGCTGGGAGTAAAGGCAAAACCTTGACACGTGTTGGTAGCTGGGACCTCATCTTCCTGAGGGCTCTGTCTTGCCTGCAGGGTCATAGCTCAGACTCTTCCCCCACCCCCTCTCTTTTCCATTGAACAAACATTTATTGAACATCCTCTGAGCACCTGGCCGTGGGAATGCCGTGGTGAATGAGAGACTAGACGTGATGCCTCTGGGGGTTGTGCGTTGGGGATGCATGCGACAGCCCATGACCCGAGGCATTCTCAGGGTATCTGTGCTGTGTGCCCGTGAGAACATCTTCCCATGACCACTCCTGCCCTCCTGCCCCGTGCTGGATCTTCCCTCCCCAGCTGGGATCTGCTCCCAGGCAACTGTGTGAATTTTACATTATTTGGAGCCTCATCTGTGTCAGGCTATAACATTCTATCCTCATCTGTAAAACTTCCCCGTCCATTATTCCTTGCACTATAACAACTGTCAACACACCAACTATTAGGAAGTTAGTATTTTGCTATTGATCACTGAATAAACATCAGAGTATTTTAAAAAACAGTTCTCTAGAAAGAACTGTTATAATTAAAATGAGTCTGAAAGATGAACTCTAGTATTAATGCCCTATATTTGATGGCACTTTATAGTTCATAAAATTAATTTCACCCCATTCTCATTGGACCCATTTCCCAAGTATTTATTGAGGCCCTGTAACAAACATGTCAGGAACTCTTCTGGGTGCTTGAGACACATCCATGAATAAAATAGGGGGAGAAGCTGTTGACCTCGTAGAGCTTATGTCTCGTGGATGTACCTGATCTTCAGAACCCGTGGATATTCCTGCAAATCCTCTGGGCCTGTATTCATTGCTTTGTCAGCATCTTGCCCTGAAATGCATTTGTCACCTACCTCTTGTTACTAAATGGTCTCTGCCCTCCAGACCCTTGTCATCCAAGGCACTAGGGGTCCTGGACACCCACTGGGGATGATGAGCTGGTAGCGACCTGTTTTGCATGAGTGCCAAGTCAGGAAAAATAAAGATATTTGTAGGCATTAAAAAAAAATACATTTCTTTAAAAATGAGAAGATGCAATATTTGTAAACTGTTGAAGCTTCCTTATTGTGCCATCACTTAAGGGTTTCATTTCTGTTTAAAGTTCTGGAAGCTGCATAACTAGCGTGGACTGACTGCTGTGTCATTGTGCTGTGCCTTTGAACCCTGGCTGAGTGAGTGAGTTTGTCCTTTGTTGATAGTGTCCTATAATTGCAAAATGTGGTTTGTCTTCTGATGCCTCTTAATACCAGATTCTTTTACTGAGATTTTTTTTTTTCATTTTCCATTGTAAATAAGGTAAATGGTAATGACTAACACAAAGCTGTATTACTCAGCCCACTTTGAAACGTGGTTTTATCACCTGTTCTTGTTAGGCAGCATGGTGTCTAATTTTGGCTTAGCAAATGACGCTCCTTGGTCTTCCTGGCTCATTAGCTGTGCCCACGAGGCTGCACTGACTGGGTCGTAAATGTATCTGAGATGTCCACACGGGGCTGCTGCTGCTCCTCTGTAATACTGAGGTCCACATGCAAAATCAGCTTTTTTTCCCCCGTAATTATCAGAGCAGCTAGGCAGGGCTGACAGCCAGGCAGACTCAGTGGGAGGCTTCTGGCCTGAGTGTGGCCTTCCCCAGAGGGTGGTTTTCCAAAGGCAGGTGGGGACTGGGGAGGCCTCGGGGGGCTGCTTGTCATTACCTGAATCACAGATGCTCTTTTGTCATACACAGCCAGCATTCCTCTGGGTTTCAGCAAGTTGGCATATCTTAAGCTTCAGAAGGAGCTGGGCCTTGCTGACTTTCCTATCTGGCCTCTTCCCTATCTCCTGTGGGGCCAAGAGCTTAGGACAGTGTCTCAGAAAAGCCTCTAAGTAGGGGGTTTTTCCCATGGGATTGTGGTAGTCTGATTTTTCATATCTATTCAAATGTTAAGAAATATTTTGTTTTCTGTATTTTTCTATTCTTTAGAAATTTTTTTATAATAGATAATTTCAAACCTATATAAATAAATCCTTATGTATTTATCATTTGACTTTATTATAAACTCATAATCAATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-ZNF498:NM_145115:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.397
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=71.4)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)