MmuINT0179339 @ mm10
Intron Retention
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145288294-145291277:+
Coord C1 exon
chr5:145288294-145288417
Coord A exon
chr5:145288418-145290329
Coord C2 exon
chr5:145290330-145291277
Length
1912 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAACCTGCTTTGTCACACAGGTG
3' ss Score
8.43
Exon sequences
Seq C1 exon
GGTCTGGGGCCATTTAAAGACATGACTTTGGGTTTTCCTGAGGAGGAATGGAGGCATGTAGCCCCAGCTCAGATTGACTGCTTTGGAGAATACGTGGACTCACAGGATTGTGGGGTCCTTCCAG
Seq A exon
GTAAGACTTTGCTGGCCAAGGTGAGGGAGAGGAGTTTGGTAGCTGCAGCTTAAGAGTCTTGCCCTAGCCGTGGTGCTGCTGACAGAACAGGGTGGGCATGTGGAGTCTTGGAGAAGCTGGCTTGGTTTGTACATGGCCTAACCACAGGAAGTAGGATGGAGCAAGCAAACACAAGGCGGTGACTGGCGGTGACAGGCAGGTTGTTGATGCCAAGGCAGTGGCTGTGTGCCCATGGCTGAAGGGCATGGAGGGCTGCAGAGAAAGGAAGGAGCAGAAGAGGAGTGTGGATCTGGGCATCCCTGCATGCAGGCCCGAAGGAGCAGCTTTGCTTTGGGACAGGGTGGGAGTGTGGCTGTGCTGGATGGGAGAATGCAGTGTGCCTGCACGTGTGTGCCTGCACGTGTGTGGACAACTGTAGGTAGAGTGAGTGAGGGCTGACTGATGATGTCAGAGGGTTAGTAAGGAGATGATCTGGATAGAAATCACCAAGTTGCATTTGTGTATGTGTGTTGTCTGTGCACACACATATATGGCTGCACACATCTGTGCTCACGCCCAGAGGAAAGAAGAGGGTATCAGGCATTTCCCTTTGTCACTTGGCCTCATTCCTTTGAGGCAGGAGCTCTCTGACAGTCCTAGTGATCTTTCTGTCTCCACCACCCACAGTGCTGGTGTTAAAGTCATGCGTGAGACCACACTAGGCTTGATCTGTGCATGCCGGGATCTGAACTCAGGTCTGGTGGTTGCACAAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTACTGAGTTAGATTTTGAAGGAAGTAAAAGTCTGAATTAGCAGGACATTCAGTGGGATGGTATGAAAATCTGTCATGCCGTTCAGCATCAGGACAGGGAGGTGGTGAGAGTAAAGAAAGGTCAGCGTTCAGGGCTCATGGAAGTCAAAGGTGTTGAGGTTGTTAACCAAAGGAAAAGAAGAGGCGCCATTGATGGGACATACTAAGAAGCTGGGTATGATTATATAGGCCTCATTCAGGATTGCATGAGTCTGAGGGCAGCCTGGTTTACAGAGTGAGACTCTATTCCTAAAAGCCAAGATCCCACCACCACCACCAAGATAAAGGGATGCATTTGTAGGCAAAGTCCTAGGACAACAAGTTCCTTAGGTGGCCAGTGATAGAAAGAGAGGAGCTGGTTTTCAGACATGCTCTGCTAGCAGGACCACAGTGTCCCAGTGGGAGAGTGCACCTTTAGAGGGGGGGGGGGTGGCATTAAAGGAGCCATAGATAGCATACTAGTGAAGTGTAGGTCGTATCATAACCATAGGCAGCCTGAAGGTCTTGAGAGGAGAGATAGCAGCCGATAGGTCTTTCAGATCCCCAGAAAGAAGTCACTTTCTGTTTTATGAAGGTTTTGGGGATGTGGTGGTAAGTTTATATTGTGCCTCCTAGCCTAACCTAGTTCACATGGTCCCTGACATGCAGGAAGCCCTGGGTAAGGGTTAATAAGAGGACTTTGGTTCTACCTGCCTCCATGCCTGTGGAAGGAGTTAGGCTTGCTCACATCTGCAAGTGGGAGAGAATTAGGGGCTATAAGGTCAGACAGTGCTCTAGAGTGGTGGTCCTCAACTTGTGGGTTTGAAGTTGAGAATCAGATATCCTTCATATCAGATATTTATTTACATTACGATTTGTAACAGCAAAATTACAGTTCTGAAGGATCAATGAAATAAGTTTGTGGCTAGGGGTCACCATACATTAGGAACTGGGTTAAAGGGCACAGCAGTAGGAAGGTTGAGAACCACTGTCCCAGAGCTGGCAGAGAAACAGGTACAGACTGGGGTGGTGCCTGGTTTCTGGGCATGAAGAGCAGCAATTGGAGGTGTGATGGGACATCACCACAGTGTTAACCTGCTTTGTCACACAG
Seq C2 exon
GTGCTGGGAGCAAGGAGAAGGAGGCTAAGCCCCAGCAGGAAGACCTGAAGAGAGCATTTGTTGGGTTGACTTCCGATGGCTTTGGAGAAGCCGACATCCAGATTCCTGGACCAGGGGGCACCTGTGAGCAGGAGCCTGGGAGCTCTGGGACCAGTCTGCCTGGGCTTCCTGCTCCTCAGCATGGGGTACCCCTGCCTGACACCCTCAACACCCACAATTCTTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGAAAAGGCTTTAGTCGGAGCTCCAACCTTGTTAGGCACCAGCGGACCCATGAAGAAGAAAAATCCTTTGGCTGTGTGGAGTGTGGGAAAGGTTTCACCCTGAGGGAATACCTCACCAAGCATCAGAGGACCCACCTGGGCAAGAGGCCCTATGTGTGTGGCGAGTGCTGGAAGACCTTCAGCCAGAGGCATCACCTGGAGGTGCACCAGCGTAGCCACACTGGGGAGAAGCCCTACAAGTGCTCAGACTGCTGGAAGGGCTTCAGCCGGAGGCAGCATCTGCTGGTGCATCGCAGGACGCACACAGGGGAGAAGCCCTACACCTGCGAGTGTGGCAAGAGTTTCAGCCGGAACGCCAACCTGGCAGTGCACCGGCGTGCCCATACTGGGGAGAAGCCCTATGGCTGCCAGGTGTGCGGCAAGCGCTTCAGCAAGGGGGAGCGACTGGTGCGACACCAGAGGATCCACACTGGTGAGAAGCCCTATCACTGCCCAGCCTGCGGCCGCAGCTTCAACCAGAGGTCCATCCTCAACCGTCATCAGAAGACCCAGCATCGCCAGGAGCCTCCGGTGCAGTGAGCCTACTAAGGGAACAGCTCTGCCATAGGAGCGACTTGTGTTGCACCGAGTGGTCTGGGCAGTGCCCAGTGAGGGACAGCAGAACGTGCTCAAGTAGGAGGAGGGCAGAGCCTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420:ENSMUST00000199563:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=NA C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGAATGGAGGCATGT
R:
TTTTCCACACTCAGGGCACTG
Band lengths:
343-2255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types