HsaEX0073794 @ hg38
Exon Skipping
Gene
ENSG00000197037 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr7:99622549-99632399:+
Coord C1 exon
chr7:99622549-99622640
Coord A exon
chr7:99624057-99624180
Coord C2 exon
chr7:99629191-99632399
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCAATCTCCTATTGTTGCAGGGG
3' ss Score
7.34
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACTACCTGTTCTGCAGGCGGGTCCTGGCCTCCCCGCAGTGAATCCCAGAGACCAAGAGATGGCAGCTGGGTTCTTTACTGCTGGATCGCAG
Seq A exon
GGGTTGGGGCCATTTAAAGATATGGCCCTGGCCTTCCCTGAGGAGGAGTGGAGGCATGTGACCCCAGCCCAGATAGACTGCTTTGGGGAGTATGTGGAACCGCAGGACTGCAGGGTCTCTCCAG
Seq C2 exon
GCGGTGGGAGCAAGGAAAAGGAGGCAAAACCCCCACAGGAAGACCTGAAAGGGGCGCTGGTGGCACTGACATCAGAGAGGTTTGGGGAAGCCTCTCTCCAGGGCCCTGGGCTCGGAAGGGTCTGTGAGCAGGAGCCTGGTGGCCCTGCAGGCAGTGCGCCTGGGCTTCCTCCTCCCCAGCACGGTGCCATCCCCCTGCCTGACGAAGTCAAAACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGGAAAGGATTCAGTCGGAGCTCCAATCTCGTCAGGCACCAGCGAACCCACGAAGAGAAGTCTTATGGCTGTGTGGAGTGTGGGAAGGGCTTTACCCTGAGAGAATACCTGATGAAGCACCAGAGAACCCACCTGGGAAAGAGGCCCTACGTGTGCAGCGAGTGCTGGAAAACCTTCAGCCAGAGACACCACCTGGAGGTGCACCAGCGCAGCCACACTGGGGAGAAGCCCTACAAGTGCGGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-'14-14,'14-11,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.571 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGGTTCTTTACTGCT
R:
GGGTTTTGACTTCGTCAGGCA
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development