BtaEX0041641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039512 | ZSCAN25
Description
zinc finger and SCAN domain containing 25 [Source:HGNC Symbol;Acc:HGNC:21961]
Coordinates
chr25:37343014-37347122:-
Coord C1 exon
chr25:37347031-37347122
Coord A exon
chr25:37345206-37345332
Coord C2 exon
chr25:37343014-37343846
Length
127 bp
Sequences
Splice sites
3' ss Seq
CATCTCCTGTGCTGTTTCAGGGG
3' ss Score
10.44
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCTGCCAGTCCTTCAGGCTGGTGCTGGCCTCCCTGCAGTGAGCACCAGAGACCAGGAGGTGGCAGCCAGCTTCCTGACGGCTGGATCCCAG
Seq A exon
GGGTTGGGCCCATTTAAAGACATGGCCCTGGCTTTCCCTGAGGAGGAGTGGAGGCACGTAACCCCAGCCCAGATAGACTGCTTTGGGGAGTATGTGGAACCCCAGGACTGCGGGGTCTCACCTCCAG
Seq C2 exon
GCCTGGGGAGCAAGGACAAGGAGGCAAAGACCCAGCTGGCAGACCCCAAGGGGCAGCTCGCTTGCGGGCGGGCAGAGAGGTGTGGGGAGGCCGCTCTCCAGGGCCCGGAGTCGGGAAGACCAAGCGAGCAGCAGGCCGGGAGCTCGGTGGGAAACGCGCCCGGGCCGCTCCTGCCCCAGCACAGCGTTGCCCCGCTGCCCGATGACCTCCAGACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGGAAAGGCTTCAGTCGGAGCTCCAACCTGGTCCGACACCAGCGGACGCACGAGGAGGAGAAGTCGTACAGCTGCGGGGAGTGCGGCAAGGGCTTTGCGCTGCGCGAGTACCTGCTGAAGCACCAGCGGACGCACCTGGGCCGGCGGCCGCACGTGTGCAGTGAGTGCTGGAAGACCTTCAGCCAGCGCCACCACCTCGCGGTCCACCAGCGCAGCCACACAGGCGAGAAGCCCTTCCAGTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039512-'7-7,'7-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.419 C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=69.8)
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCCTGACGGCTGGATC
R:
TTCCAGAAGGAGCTGTGGGTC
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development